CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g34440

Gene name protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g34440 829595 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVA S.X. H.G.
0.74 86.1 At5g26700 832719 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFOAM S.X. H.G.
0.71 84.2 At3g05930 819762 GLP8 (GERMIN-LIKE PROTEIN 8) germin-like protein (GLP8) S.X. H.G.
0.71 84.2 At2g02140 814745 LCR72 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 72) Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. S.X. H.G.
0.70 83.5 At3g62180 825391 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.68 82.2 At3g26860 822302 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.67 81.6 At5g50030 835067 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.65 79.6 At1g24520 839067 BCP1 Male fertility gene acting on tapetum and microspore S.X. H.G.
0.63 78.1 At4g28280 828943 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
0.63 78.1 At2g45800 819188 LIM domain-containing protein F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
160.7 99.9 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
129.9 99.9 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
108.4 99.9 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
107.1 99.9 GSM154505 Arabidopsis hydrated pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
106.5 99.9 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
105.5 99.9 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
103.6 99.9 E-MEXP-1138-raw-cel-1432772938
101.1 99.9 E-MEXP-1138-raw-cel-1432772874
97.2 99.9 E-MEXP-1138-raw-cel-1432773226
95.5 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.27 8e-60 232 At3g18810 821414 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OMBPFVA C.G. S.X.
0.16 2e-36 155 At2g18470 816362 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVA C.G. S.X.
0.13 1e-34 149 At1g49270 841351 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MOBPFVA C.G. S.X.
0.12 5e-12 73 At1g52290 841659 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.08 5e-12 73 At1g70460 843382 protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MBOPFVA C.G. S.X.
0.07 3e-10 67 At3g24550 822051 ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1) encodes an ortholog of Brassica napus proline extensin-like receptor kinase. Expression of the brassica gene is induced by wounding and fungal infection. C.G. S.X.
0.08 3e-7 57 At1g70450 843381 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.07 1e-6 56 At1g23540 838963 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOBFPVA C.G. S.X.
0.02 2e-5 52 At5g35960 833587 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 2e-5 52 Glycine max GmaAffx.76163.2.S1_at BG511034 GmPERK1 mRNA for putative receptor protein kinase PERK1 - 3e-17 At3g24550 ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1) C.G. S.X.
0.08 3e-2 40 Hordeum vulgare Contig13746_at Contig13746 - - 8e-10 At1g23540 protein kinase family protein C.G. S.X.
0.06 8e-6 54 Oryza sativa Os01g0227200 AK103247.1 - Somatic embryogenesis receptor kinase-like protein 2e-8 At3g24550 ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1) C.G. S.X.
0.25 1e-77 291 Populus trichocarpa PtpAffx.224433.1.S1_at pmrna42956 hypothetical protein - 1e-77 At4g34440 protein kinase family protein C.G. S.X.
0.12 3e-7 57 Triticum aestivum Ta.823.1.S1_a_at CK205645 - - 3e-7 At4g34440 protein kinase family protein C.G. S.X.
0.03 5e-3 42 Vitis vinifera 1608969_at CB969747 hypothetical protein LOC100265723 - 2e-40 At1g66150 TMK1 (TRANSMEMBRANE KINASE 1) C.G. S.X.
0.03 1e-1 38 Zea mays ZmAffx.905.1.S1_at AI770915 - - 1e-11 At2g20300 ALE2 (Abnormal Leaf Shape 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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