Gene omics information

Query gene ID At4g34410
Gene name RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g34410829591RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.S.X.H.G.
0.9195.6At2g050503767735catalyticF:catalytic activity;P:biological_process unknown;C:cellular_component unknownS.X.H.G.
0.8391.4At4g29780829100unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MPFS.X.H.G.
0.8089.8At2g30040817555MAPKKK14member of MEKK subfamilyS.X.H.G.
0.7184.2At3g61190825291BAP1 (BON ASSOCIATION PROTEIN 1)Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis.S.X.H.G.
0.6781.6At1g80840844423WRKY40Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
181.8100.0E-MEXP-807-raw-cel-1173273060
179.8100.0E-MEXP-807-raw-cel-1173273223
164.5100.0E-MEXP-807-raw-cel-1173273088
163.099.9E-MEXP-807-raw-cel-1173273116
149.699.9E-MEXP-807-raw-cel-1173273196
129.999.9E-MEXP-807-raw-cel-1173273170
116.499.9E-MEXP-807-raw-cel-1173273252
99.399.9E-MEXP-807-raw-cel-1173273144
84.499.9GSM184501Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
84.399.9GSM184520Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.067e-652At2g31230817680ATERF15 (Ethylene-responsive element binding factor 15)encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.C.G.S.X.
0.033e-550At2g40220818614ABI4 (ABA INSENSITIVE 4)encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings.C.G.S.X.
0.051e-448At5g64750836596ABR1 (ABA REPRESSOR1)Encodes a putative transcription factor containing an AP2 domain. Is a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. Expressed in response to ABA, osmotic stress, sugar stress and drought. Mutants are hypersensitive to these stresses. May be involved in regulation of ABA mediated stress response.C.G.S.X.
0.061e-448At3g61630825336CRF6 (CYTOKININ RESPONSE FACTOR 6)CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves.C.G.S.X.
0.051e-448At2g46310819239CRF5 (CYTOKININ RESPONSE FACTOR 5)CRF5 encodes one of the six cytokinin response factors. It is transcriptionally upregulated in response to cytokinin. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves.C.G.S.X.
0.064e-446At5g50080835072DNA binding / transcription factorencodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.C.G.S.X.
0.064e-446At2g33710817936AP2 domain-containing transcription factor family proteinencodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.C.G.S.X.
0.044e-446At1g64380842745AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.C.G.S.X.
0.034e-446At1g36060840510AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.074e-240Glycine maxGmaAffx.92676.1.S1_s_atCF808401--6e-2At2g33710AP2 domain-containing transcription factor family proteinC.G.S.X.
0.033e-342Hordeum vulgareContig3867_atContig3867--3e-9At1g72360ethylene-responsive element-binding protein, putativeC.G.S.X.
0.032e-138Oryza sativaOs02g0101300AK105715.1-Conserved hypothetical protein9e-2At5g40500unknown proteinC.G.S.X.
0.069e-342Populus trichocarpaPtpAffx.209271.1.S1_atpmrna18315AP2/ERF domain-containing transcription factor-2e-16At2g40220ABI4 (ABA INSENSITIVE 4)C.G.S.X.
0.034e-136Triticum aestivumTaAffx.107724.1.S1_atCA696363--4e-2At1g76180ERD14 (EARLY RESPONSE TO DEHYDRATION 14)C.G.S.X.
0.041e-136Vitis vinifera1618310_s_atCF210664hypothetical protein LOC100259803-1e-1At3g01970WRKY45C.G.S.X.
0.053e-342Zea maysZm.14452.1.S1_atAY108380.1ethylene response element binding protein-1e-8At3g14230RAP2.2C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0050832Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
XGO:0010200A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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