CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g34400

Gene name DNA binding / transcription factor

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.38 46.7 At4g34400 829590 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVA S.X. H.G.
0.60 75.7 At5g47600 834810 heat shock protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;PB S.X. H.G.
0.31 33.8 At1g53160 841749 SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4) Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. S.X. H.G.
0.25 22.6 At5g44620 834490 CYP706A3 member of CYP706A S.X. H.G.
0.17 10.2 At1g02800 839385 ATCEL2 Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
174.9 100.0 GSM242955 Steroid day 1 (day1D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
165.6 100.0 GSM242959 Steroid day 3 (day3D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
129.0 99.9 E-MEXP-682-raw-cel-922397645
117.6 99.9 GSM242957 Mock day 3 (day3E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
107.6 99.9 E-MEXP-682-raw-cel-922397662
105.4 99.9 E-MEXP-682-raw-cel-922397594
100.8 99.9 E-MEXP-682-raw-cel-922397679
98.0 99.9 E-MEXP-682-raw-cel-922397611
86.7 99.9 E-MEXP-682-raw-cel-922397713
86.5 99.9 GSM242953 Mock day 1 (day1E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 6e-4 46 At3g06160 819790 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PO C.G. S.X.
0.03 2e-3 44 At1g62333 6240573 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOPBFVA C.G. S.X.
0.01 4e-2 40 At5g64270 836548 splicing factor, putative F:binding;P:mRNA processing;C:chloroplast;MFOBPAV C.G. S.X.
0.02 4e-2 40 At3g57670 824936 NTT (NO TRANSMITTING TRACT) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:pollen tube growth, regulation of transcription;C:intracellular, chloroplast;MPOFVBA C.G. S.X.
0.02 4e-2 40 At1g63980 842701 D111/G-patch domain-containing protein F:nucleic acid binding;P:biological_process unknown;C:intracellular;OMFBPVA C.G. S.X.
0.01 1e-1 38 At5g01360 830298 - F:unknown;P:unknown;C:unknown;PMF C.G. S.X.
0.02 1e-1 38 At5g66540 836786 - F:molecular_function unknown;P:rRNA processing;C:cytosol, nucleolus, nucleus;MOFBPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Glycine max PsAffx.C80000063_at PsAffx.C80000063 - - 2e-5 At2g21420 zinc finger protein-related C.G. S.X.
0.03 3e-1 36 Hordeum vulgare EBro08_SQ003_C15_at EBro08_SQ003_C15 - - 2e-2 At3g21850 ASK9 (ARABIDOPSIS SKP1-LIKE 9) C.G. S.X.
0.02 7e-2 40 Oryza sativa OsAffx.22696.1.S1_at - - - 0 C.G. S.X.
0.03 1e-2 42 Populus trichocarpa PtpAffx.221489.1.S1_at pmrna38395 hypothetical protein - 4e-3 At3g52820 PAP22 (PURPLE ACID PHOSPHATASE 22) C.G. S.X.
0.02 6e-1 36 Triticum aestivum TaAffx.131907.1.S1_s_at CA726982 - - 3e-1 At4g34400 DNA binding / transcription factor C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1617878_at CF510921 hypothetical protein LOC100258943 - 3e-85 At2g47110 UBQ6 C.G. S.X.
0.02 3e-1 36 Zea mays Zm.7750.4.S1_x_at AW499152 - - 3e-28 At1g75780 TUB1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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