Gene omics information

Query gene ID At4g34400
Gene name DNA binding / transcription factor
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3846.7At4g34400829590DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVAS.X.H.G.
0.6075.7At5g47600834810heat shock protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PBS.X.H.G.
0.3133.8At1g53160841749SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.S.X.H.G.
0.2522.6At5g44620834490CYP706A3member of CYP706AS.X.H.G.
0.1710.2At1g02800839385ATCEL2Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
174.9100.0GSM242955Steroid day 1 (day1D1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
165.6100.0GSM242959Steroid day 3 (day3D1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
129.099.9E-MEXP-682-raw-cel-922397645
117.699.9GSM242957Mock day 3 (day3E1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
107.699.9E-MEXP-682-raw-cel-922397662
105.499.9E-MEXP-682-raw-cel-922397594
100.899.9E-MEXP-682-raw-cel-922397679
98.099.9E-MEXP-682-raw-cel-922397611
86.799.9E-MEXP-682-raw-cel-922397713
86.599.9GSM242953Mock day 1 (day1E1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.076e-446At3g06160819790transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POC.G.S.X.
0.032e-344At1g623336240573unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOPBFVAC.G.S.X.
0.014e-240At5g64270836548splicing factor, putativeF:binding;P:mRNA processing;C:chloroplast;MFOBPAVC.G.S.X.
0.024e-240At3g57670824936NTT (NO TRANSMITTING TRACT)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:pollen tube growth, regulation of transcription;C:intracellular, chloroplast;MPOFVBAC.G.S.X.
0.024e-240At1g63980842701D111/G-patch domain-containing proteinF:nucleic acid binding;P:biological_process unknown;C:intracellular;OMFBPVAC.G.S.X.
0.011e-138At5g01360830298-F:unknown;P:unknown;C:unknown;PMFC.G.S.X.
0.021e-138At5g66540836786-F:molecular_function unknown;P:rRNA processing;C:cytosol, nucleolus, nucleus;MOFBPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-138Glycine maxPsAffx.C80000063_atPsAffx.C80000063--2e-5At2g21420zinc finger protein-relatedC.G.S.X.
0.033e-136Hordeum vulgareEBro08_SQ003_C15_atEBro08_SQ003_C15--2e-2At3g21850ASK9 (ARABIDOPSIS SKP1-LIKE 9)C.G.S.X.
0.027e-240Oryza sativaOsAffx.22696.1.S1_at---0C.G.S.X.
0.031e-242Populus trichocarpaPtpAffx.221489.1.S1_atpmrna38395hypothetical protein-4e-3At3g52820PAP22 (PURPLE ACID PHOSPHATASE 22)C.G.S.X.
0.026e-136Triticum aestivumTaAffx.131907.1.S1_s_atCA726982--3e-1At4g34400DNA binding / transcription factorC.G.S.X.
0.032e-136Vitis vinifera1617878_atCF510921hypothetical protein LOC100258943-3e-85At2g47110UBQ6C.G.S.X.
0.023e-136Zea maysZm.7750.4.S1_x_atAW499152--3e-28At1g75780TUB1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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