CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g34390

Gene name XLG2 (extra-large GTP-binding protein 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At4g34390 829589 XLG2 (extra-large GTP-binding protein 2) F:guanyl nucleotide binding, signal transducer activity;P:in 7 processes;C:nucleus;MFPOB S.X. H.G.
0.86 93.1 At4g14365 827080 zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVA S.X. H.G.
0.67 81.6 At4g39640 830118 GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1) The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast. S.X. H.G.
0.61 76.7 At1g07000 837210 ATEXO70B2 (exocyst subunit EXO70 family protein B2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
0.60 75.7 At4g33050 829442 EDA39 (embryo sac development arrest 39) F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFO S.X. H.G.
0.59 74.7 At3g52400 824405 SYP122 (SYNTAXIN OF PLANTS 122) syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathway S.X. H.G.
0.48 62.5 At4g34150 829563 C2 domain-containing protein F:unknown;P:response to cold;C:unknown;MPFOBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
92.7 99.9 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
85.3 99.9 GSM244448 Arabidopsis wild-type_6 h_ Xanthomonas inoculated_biological rep1_exp1 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
72.6 99.9 E-MEXP-807-raw-cel-1173273252
70.2 99.9 E-MEXP-546-raw-cel-863289476
68.8 99.9 E-MEXP-807-raw-cel-1173273144
63.4 99.8 GSM244455 Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
59.2 99.8 E-MEXP-546-raw-cel-863289404
57.7 99.8 E-MEXP-546-raw-cel-863289532
57.4 99.8 E-MEXP-546-raw-cel-863289424
43.1 99.8 E-MEXP-546-raw-cel-863289586
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-6 56 At1g31930 840083 XLG3 (extra-large GTP-binding protein 3) Encodes XLG3 (extra-large G protein 3) that shows significant similarity to the G protein alpha subunit in its C terminal region. Involved in the regulation of root morphological and growth responses. C.G. S.X.
0.01 8e-2 40 At3g13200 820510 EMB2769 (EMBRYO DEFECTIVE 2769) F:molecular_function unknown;P:nuclear mRNA splicing, via spliceosome;C:spliceosome;MOFPBVA C.G. S.X.
0.01 8e-2 40 At2g03170 814846 ASK14 (ARABIDOPSIS SKP1-LIKE 14) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MPOFV C.G. S.X.
0.01 8e-2 40 At2g23460 816878 XLG1 (EXTRA-LARGE G-PROTEIN 1) encodes a novel G-alpha protein that shares similarity to plant, yeast, and animal G-alpha proteins at the C-terminus. It contains an N-terminus that is as large as the C-terminus, is a member of a small family, and is expressed in all tissues examined, including roots, leaves, stems, flowers, and fruits. C.G. S.X.
0.01 3e-1 38 At5g41840 834189 F-box family protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.01 3e-1 38 At2g42300 818831 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMF C.G. S.X.
0.01 1e+0 36 At5g19380 832058 unknown protein F:unknown;P:unknown;C:chloroplast;OPBMA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Glycine max HgAffx.18892.1.S1_at CA940288 - - 9e-1 At4g26060 unknown protein C.G. S.X.
0.01 2e-1 38 Hordeum vulgare HF14N13r_at HF14N13r - - 3e-1 At5g10350 polyadenylate-binding protein family protein / PABP family protein C.G. S.X.
0.02 3e+0 36 Oryza sativa Os12g0593000 AK067863.1 - Extra-large G-protein 3e-7 At2g23460 XLG1 (EXTRA-LARGE G-PROTEIN 1) C.G. S.X.
0.04 2e-3 46 Populus trichocarpa PtpAffx.215369.1.S1_at pmrna29515 hypothetical protein - 5e-18 At1g31930 XLG3 (extra-large GTP-binding protein 3) C.G. S.X.
0.01 9e-2 40 Triticum aestivum TaAffx.26707.1.S1_at CA685916 - - 1e+0 At3g20220 auxin-responsive protein, putative C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1620938_at CA817950 hypothetical LOC100248291 - 1e+0 At1g78220 GRF13 C.G. S.X.
0.01 2e+0 34 Zea mays ZmAffx.977.1.S1_at AI833949 - - 8e-1 At4g04630 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010555 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus.
X GO:0009737 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
X GO:0009744 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus.
X GO:0009749 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus.
X GO:0009750 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fructose stimulus.
C GO:0007186 The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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