CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g34290

Gene name SWIB complex BAF60b domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g34290 829579 SWIB complex BAF60b domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OPBMFV S.X. H.G.
1.00 100.0 At1g10522 837593 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.67 81.6 At2g44640 819072 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, chloroplast, plasma membrane, plastid, chloroplast envelope;PO S.X. H.G.
0.40 50.8 At1g11430 837685 plastid developmental protein DAG, putative F:unknown;P:unknown;C:chloroplast stroma, chloroplast, chloroplast envelope;P S.X. H.G.
0.40 50.8 At2g33430 817907 DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) F:molecular_function unknown;P:plastid organization, endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA);C:chloroplast;P S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.7 99.4 GSM133307 RIKEN-NAKABAYASHI3A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
12.8 99.3 GSM133308 RIKEN-NAKABAYASHI4A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
12.4 99.3 GSM183518 35S:ATR1_like_miR_rep1 GSE7570 ATR1_like_Clade_OE_and_miR
11.8 99.3 E-TABM-62-raw-cel-720976872
10.9 99.2 GSM133310 RIKEN-NAKABAYASHI5B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
10.7 99.2 GSM133319 RIKEN-LI5A GSE5701 AtGenExpress: Basic hormone treatment of seeds
10.7 99.2 GSM133317 RIKEN-LI4A GSE5701 AtGenExpress: Basic hormone treatment of seeds
10.6 99.2 E-TABM-62-raw-cel-720984459
10.4 99.2 E-TABM-62-raw-cel-720981923
10.1 99.2 GSM133306 RIKEN-NAKABAYASHI2B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.38 4e-46 184 At2g14880 815977 SWIB complex BAF60b domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OPFBMV C.G. S.X.
0.02 2e-1 36 At4g00260 828225 MEE45 (maternal effect embryo arrest 45) F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent;C:endomembrane system;P C.G. S.X.
0.01 2e-1 36 At2g24650 817001 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:apoplast;PM C.G. S.X.
0.03 8e-1 34 At5g18000 831667 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POMF C.G. S.X.
0.03 8e-1 34 At5g03060 831678 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPAV C.G. S.X.
0.01 8e-1 34 At1g58410 842210 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFA C.G. S.X.
0.01 8e-1 34 At1g03000 839315 PEX6 (PEROXIN 6) Encodes an apparent ATPase similar to yeast and human protein required for peroxisomal biogenesis. May facilitate recycling of PEX5, the peroxisomal matrix protein receptor, and thereby promote peroxisomal matrix protein import. C.G. S.X.
0.01 3e+0 32 At5g58140 835926 PHOT2 (PHOTOTROPIN 2) Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 5e-3 42 Glycine max Gma.705.1.S1_a_at BE823322 - - 5e-3 At4g34290 SWIB complex BAF60b domain-containing protein C.G. S.X.
0.07 4e-1 34 Hordeum vulgare Contig11253_at Contig11253 - - 1e+0 At4g34290 SWIB complex BAF60b domain-containing protein C.G. S.X.
0.04 7e-3 42 Oryza sativa OsAffx.7765.1.S1_at - - - 0 C.G. S.X.
0.04 5e-3 42 Populus trichocarpa Ptp.5425.1.S1_s_at CV264693 hypothetical protein - 7e-3 At4g34290 SWIB complex BAF60b domain-containing protein C.G. S.X.
0.06 1e-3 44 Triticum aestivum Ta.13368.3.A1_at CA628267 - - 1e-3 At4g34290 SWIB complex BAF60b domain-containing protein C.G. S.X.
0.16 6e-2 36 Vitis vinifera 1611065_at CF373612 hypothetical protein LOC100242279 - 4e-1 At4g34290 SWIB complex BAF60b domain-containing protein C.G. S.X.
0.04 6e-3 40 Zea mays Zm.7005.1.A1_at BM333037 hypothetical protein LOC100275998 - 2e-2 At4g34290 SWIB complex BAF60b domain-containing protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage