CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g34240

Gene name ALDH3I1 (ALDEHYDE DEHYDROGENASE 3|1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g34240 829573 ALDH3I1 (ALDEHYDE DEHYDROGENASE 3|1) Aldehyde dehydrogenase induced by ABA and dehydration S.X. H.G.
0.67 81.6 At1g54350 841876 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast;BOMFAPV S.X. H.G.
0.64 78.9 At3g04870 819647 ZDS (ZETA-CAROTENE DESATURASE) Involved in the biosynthesis of carotenes and xanthophylls, reduces zeta-carotene to lycopene. S.X. H.G.
0.63 78.1 At3g19170 821451 ATPREP1 (PRESEQUENCE PROTEASE 1) Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed only in siliques and flowers S.X. H.G.
0.61 76.7 At3g19720 821509 ARC5 (ACCUMULATION AND REPLICATION OF CHLOROPLAST 5) Encodes a novel chloroplast division protein. Mutants of exhibit defects in chloroplast constriction, have enlarged, dumbbell-shaped chloroplasts. The ARC5 gene product shares similarity with the dynamin family of GTPases, which mediate endocytosis, mitochondrial division, and other organellar fission and fusion events in eukaryotes. Phylogenetic analysis showed that ARC5 is related to a group of dynamin-like proteins unique to plants. A GFP–ARC5 fusion protein localizes to a ring at the chloroplast division site. Chloroplast import and protease protection assays indicate that the ARC5 ring is positioned on the outer surface of the chloroplast. Facilitates separation of the two daughter chloroplasts. S.X. H.G.
0.61 76.7 At5g22620 832325 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:chloroplast;BOMFPA S.X. H.G.
0.61 76.7 At2g21340 816673 antiporter/ drug transporter F:drug transporter activity, antiporter activity;P:multidrug transport;C:chloroplast;BOPAFM S.X. H.G.
0.59 74.7 At2g23390 816871 - F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP S.X. H.G.
0.58 73.8 At4g02260 828096 RSH1 (RELA-SPOT HOMOLOG 1) F:catalytic activity;P:response to wounding;C:chloroplast;BOPMAFV S.X. H.G.
0.57 73.8 At3g29290 822586 emb2076 (embryo defective 2076) F:unknown;P:embryonic development ending in seed dormancy;C:unknown;POFMBA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
47.4 99.8 E-MEXP-1443-raw-cel-1581869863
33.4 99.7 E-MEXP-1443-raw-cel-1581869921
27.0 99.7 GSM204069 protoplast_hypoxia_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
21.5 99.6 GSM142832 GM001_ATH1_A9-Torres-3N6_repeat2 GSE6176 Impact of Type III effectors on plant defense responses
19.5 99.6 GSM131131 AtGen_B-17_2-3-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
17.1 99.5 GSM142839 MG001_ATH1_A18-Torres-6N6 GSE6176 Impact of Type III effectors on plant defense responses
15.5 99.5 GSM152143 siz1-3 drought 2 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
14.7 99.4 GSM131143 AtGen_B-29_3-1-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
14.1 99.4 E-ATMX-33-raw-cel-1562596264
14.1 99.4 GSM152145 siz1-3 drought 3 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 9e-4 46 At1g44170 841020 ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) Encodes a protein similar to the aldehyde dehydrogenase cp-ADH from C.plantagineum. Constitutively expressed at low levels. C.G. S.X.
0.02 1e-2 42 At1g80500 844389 - F:molecular_function unknown;P:transport, ER to Golgi vesicle-mediated transport;C:intracellular;MFOP C.G. S.X.
0.01 2e-1 38 At5g41800 834185 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;PMFO C.G. S.X.
0.01 2e-1 38 At3g19370 821471 - F:unknown;P:unknown;C:plasma membrane;MOBFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 9e-17 89 Glycine max Gma.15223.2.S1_at BE330849 - - 3e-17 At4g34240 ALDH3I1 (ALDEHYDE DEHYDROGENASE 3|1) C.G. S.X.
0.08 3e-8 59 Hordeum vulgare Contig4830_at Contig4830 - - 6e-8 At4g34240 ALDH3I1 (ALDEHYDE DEHYDROGENASE 3|1) C.G. S.X.
0.02 2e+0 36 Oryza sativa OsAffx.26916.1.S1_at - - - 0 C.G. S.X.
0.12 1e-18 95 Populus trichocarpa PtpAffx.205540.1.S1_at pmrna10959 hypothetical protein - 8e-7 At1g44170 ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) C.G. S.X.
0.06 1e-5 52 Triticum aestivum TaAffx.8338.1.S1_at CA626993 - - 1e+0 At1g44170 ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) C.G. S.X.
0.08 2e-11 69 Vitis vinifera 1617309_at CB922444 hypothetical protein LOC100266331 - 6e-14 At1g44170 ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) C.G. S.X.
0.03 6e-6 52 Zea mays Zm.17294.1.S1_at CD219156 - - 3e-5 At4g34240 ALDH3I1 (ALDEHYDE DEHYDROGENASE 3|1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009414 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
X GO:0009737 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00010 Glycolysis / Gluconeogenesis
00053 Ascorbate and aldarate metabolism
00071 Fatty acid metabolism
00280 Valine, leucine and isoleucine degradation
00310 Lysine degradation
00330 Arginine and proline metabolism
00340 Histidine metabolism
00380 Tryptophan metabolism
00410 beta-Alanine metabolism
00561 Glycerolipid metabolism
00620 Pyruvate metabolism
00640 Propanoate metabolism
00650 Butanoate metabolism
00903 Limonene and pinene degradation
01100 Metabolic pathways
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