Gene omics information

Query gene ID At4g34230
Gene name ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2217.5At4g34230829572ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5)Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use sinapyl, caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates.S.X.H.G.
0.4050.8At1g08940837415phosphoglycerate/bisphosphoglycerate mutase family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;BFOPAMS.X.H.G.
0.146.8At1g63720842676-F:unknown;P:unknown;C:unknown;MPFOVBS.X.H.G.
0.114.1At2g39660818549BIK1 (BOTRYTIS-INDUCED KINASE1)Encodes a plasma membrane-localized ser/thr protein kinase that is a crucial component of host response signaling required to activate the resistance responses to Botrytis and A. brassicicola infection. It is likely a negative regulator of salicylic acid accumulation and basal defense against virulent bacterial pathogens.S.X.H.G.
0.092.8At5g12010831074unknown proteinF:unknown;P:response to salt stress;C:chloroplast, plasma membrane, membrane;MPFOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
56.699.8E-MEXP-1443-raw-cel-1581869921
38.099.8GSM142834MG001_ATH1_A12-Torres-5N6GSE6176Impact of Type III effectors on plant defense responses
32.799.7GSM142836MG001_ATH1_A15-Torres-4N6GSE6176Impact of Type III effectors on plant defense responses
29.699.7GSM131112AtGen_B-40_3-5-4_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
29.699.7GSM131111AtGen_B-39_3-4-4_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
28.999.7E-MEXP-1443-raw-cel-1581869863
28.499.7GSM142839MG001_ATH1_A18-Torres-6N6GSE6176Impact of Type III effectors on plant defense responses
26.399.7GSM131113AtGen_B-41_3-6-4_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
26.199.7GSM131139AtGen_B-25_2-4-4_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
26.099.7GSM131141AtGen_B-27_2-6-4_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.432e-31137At3g19450821479ATCAD4Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates.C.G.S.X.
0.034e-550At2g21730816710CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAVC.G.S.X.
0.034e-550At2g21890816725CAD3 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3)F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAVC.G.S.X.
0.033e-240At4g39330830088CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9)F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:apoplast;BOPFMAVC.G.S.X.
0.011e-138At5g184752745987pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBAC.G.S.X.
0.015e-136At5g47820834833FRA1 (FRAGILE FIBER 1)encodes a kinesin-like protein with an N-terminal microtubule binding motor domain. Protein is localized to the periphery of the cytoplasm and mutants in the gene exhibit altered orientation of cellulose microfibrils and reduced mechanical strength of fibers.C.G.S.X.
0.025e-136At5g25140832585CYP71B13putative cytochrome P450C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.284e-21103Glycine maxGma.8251.1.S1_a_atAW394443--4e-21At4g34230ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5)C.G.S.X.
0.239e-23107Hordeum vulgareX92754_atX92754--7e-23At4g34230ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5)C.G.S.X.
0.043e-138Oryza sativaOs09g0399800AK059858.1-Probable mannitol dehydrogenase 1 (EC 1.1.1.255)(NAD-dependent mannitol dehydrogenase 1)2e-1At3g28560-C.G.S.X.
0.142e-22107Populus trichocarpaPtp.791.1.S1_s_atCK087231cinnamyl alcohol dehydrogenase-6e-26At3g19450ATCAD4C.G.S.X.
0.049e-342Triticum aestivumTa.13798.1.S1_atCK161291--2e-8At3g19450ATCAD4C.G.S.X.
0.344e-36151Vitis vinifera1615439_atCF213244hypothetical protein LOC100257308-6e-23At3g19450ATCAD4C.G.S.X.
0.061e-654Zea maysZm.64.1.A1_atAY109876.1cinnamyl alcohol dehydrogenase-6e-8At3g19450ATCAD4C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009809The chemical reactions and pathways resulting in the formation of lignins, a class of polymers formed by the dehydrogenetive radical polymerization of various phenylpropanoid monomers.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00064Link to KaPPA-View 4The cinnamate-monolignol pathway/sinapoyl ester biosynthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00940Link to KEGG PATHWAYPhenylpropanoid biosynthesis
01061Link to KEGG PATHWAYBiosynthesis of phenylpropanoids
01100Link to KEGG PATHWAYMetabolic pathways
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