CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g34150

Gene name C2 domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.80 89.8 At4g34150 829563 C2 domain-containing protein F:unknown;P:response to cold;C:unknown;MPFOBVA S.X. H.G.
0.83 91.4 At4g39640 830118 GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1) The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast. S.X. H.G.
0.71 84.2 At3g09830 820141 protein kinase, putative F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.67 81.6 At1g55450 841992 embryo-abundant protein-related F:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOA S.X. H.G.
0.67 81.6 At3g45640 823706 ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) Encodes a mitogen-activated kinase whose mRNA levels increase in response to touch, cold, salinity stress and chitin oligomers.Also functions in ovule development. Heterozygous MPK3 mutants in a homozygous MPK6 background are female sterile due to defects in integument development. MPK3 can be dephosphorylated by MKP2 in vitro. S.X. H.G.
0.67 81.6 At3g52400 824405 SYP122 (SYNTAXIN OF PLANTS 122) syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathway S.X. H.G.
0.53 68.6 At1g28380 839735 NSL1 (necrotic spotted lesions 1) This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
66.2 99.8 E-MEXP-807-raw-cel-1173273252
50.9 99.8 E-MEXP-807-raw-cel-1173273144
46.5 99.8 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
43.3 99.8 E-MEXP-807-raw-cel-1173273060
42.6 99.8 E-MEXP-807-raw-cel-1173273223
40.9 99.8 E-MEXP-807-raw-cel-1173273116
40.5 99.8 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
39.2 99.8 E-MEXP-807-raw-cel-1173273170
36.1 99.7 E-MEXP-807-raw-cel-1173273088
35.4 99.7 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-1 36 At5g06630 830551 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA C.G. S.X.
0.01 4e-1 36 At3g63070 825482 PWWP domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB C.G. S.X.
0.01 4e-1 36 At2g24980 817037 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA C.G. S.X.
0.02 1e+0 34 At4g13390 826970 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA C.G. S.X.
0.02 1e+0 34 At3g16590 820910 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.02 1e+0 34 At3g46690 823822 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF C.G. S.X.
0.01 1e+0 34 At1g29900 839868 CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) carbamoyl phosphate synthetase large chain (CARB) mRNA, C.G. S.X.
0.02 1e+0 34 At1g32360 840128 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:cellular_component unknown;MPBOFVA C.G. S.X.
0.01 1e+0 34 At1g23720 838982 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 2e-9 63 Glycine max GmaAffx.18316.2.S1_at AI494765 - - 1e-9 At4g34150 C2 domain-containing protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig11773_at Contig11773 - - 4e+0 At4g34150 C2 domain-containing protein C.G. S.X.
0.05 2e-1 38 Oryza sativa Os06g0638900 AK058988.1 - C2 domain containing protein 2e-1 At4g34150 C2 domain-containing protein C.G. S.X.
0.16 6e-13 75 Populus trichocarpa PtpAffx.9525.2.S1_at DN486467 hypothetical protein - 6e-13 At4g34150 C2 domain-containing protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.24911.1.S1_at CA710019 - - 5e-1 At5g63240 glycosyl hydrolase family protein 17 C.G. S.X.
0.04 2e+0 32 Vitis vinifera 1607766_at CF605363 hypothetical protein LOC100252384 - 2e-5 At1g12100 lipid binding C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.918.1.A1_at AI782957 - - 8e-1 At3g06750 hydroxyproline-rich glycoprotein family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009409 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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