Gene omics information

Query gene ID At4g34090
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g34090829555unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;POS.X.H.G.
0.5065.3At4g04350825755EMB2369 (EMBRYO DEFECTIVE 2369)F:aminoacyl-tRNA ligase activity, nucleotide binding, leucine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBAMFPVS.X.H.G.
0.1710.2At4g29590829080methyltransferaseF:methyltransferase activity;P:metabolic process;C:chloroplast;BOPAFS.X.H.G.
0.071.9At4g09010826480APX4 (ASCORBATE PEROXIDASE 4)Encodes a microsomal ascorbate peroxidase APX4. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.S.X.H.G.
0.061.4At2g21385816677unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;PS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
183.5100.0GSM133758Lindsey_1-11_heart-stage-root_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
33.599.7GSM133755Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
20.599.6GSM133767Lindsey_1-19_torpedo-basal_Rep4_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
20.499.6GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.799.5GSM133768Lindsey_1-20_torpedo-basal_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.299.4GSM133756Lindsey_1-10_heart-stage-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.799.1GSM268008Col-0, Time 0, rep-AGSE10646BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
9.599.1GSM133763Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.399.1E-TABM-21-raw-cel-529816362
9.399.1E-TABM-21-raw-cel-529816648
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.023e-240At3g48000823955ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4)Encodes a putative (NAD+) aldehyde dehydrogenase.C.G.S.X.
0.063e-240At2g23370816869unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POC.G.S.X.
0.015e-136At5g44740834503POLH (Y-FAMILT DNA POLYMERASE H)Y-family DNA polymerase. Catalyses translesion synthesis in response to UV damage. Functionally interacts with PCNA2. Has a ubiquitin binding motif.C.G.S.X.
0.015e-136At1g03100839573pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:unknown;POMBFC.G.S.X.
0.012e+034At5g37180833692SUS5Encodes a protein with sucrose synthase activity (SUS5).C.G.S.X.
0.012e+034At5g22110832272ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2)Encodes a protein with similarity to DNA polymerase epsilon subunit B an essential gene that is required for DNA replication. Homozygous mutants are embryo lethal. Expressed in meristematic , rapidly dividing regions.C.G.S.X.
0.032e+034At3g629886240951unknown proteinF:unknown;P:unknown;C:unknownC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.198e-1375Glycine maxGma.6893.1.A1_atCD418129--4e-13At4g34090unknown proteinC.G.S.X.
0.049e-134Hordeum vulgareContig17805_atContig17805--2e+0At4g34090unknown proteinC.G.S.X.
0.024e+034Oryza sativaOs03g0670000AK063641.1-Conserved hypothetical protein4e-4At5g63150unknown proteinC.G.S.X.
0.286e-23109Populus trichocarpaPtpAffx.204679.1.S1_s_atpmrna9213hypothetical protein-5e-14At4g34090unknown proteinC.G.S.X.
0.075e-446Triticum aestivumTa.7863.1.S1_x_atBQ160817--4e-4At4g34090unknown proteinC.G.S.X.
0.026e-134Vitis vinifera1611382_atCF212352hypothetical protein LOC100264955-2e-6At3g53850-C.G.S.X.
0.025e-238Zea maysZm.8168.1.A1_atBM073139hypothetical protein LOC100194184-2e-21At5g13610unknown proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage