CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g34030

Gene name MCCB (3-METHYLCROTONYL-COA CARBOXYLASE)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At4g34030 829549 MCCB (3-METHYLCROTONYL-COA CARBOXYLASE) MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not. S.X. H.G.
1.00 100.0 At3g06850 819869 BCE2 dihydrolipoamide branched chain acyltransferase S.X. H.G.
0.73 85.5 At1g03090 838362 MCCA MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. S.X. H.G.
0.67 81.6 At3g13450 820547 DIN4 (DARK INDUCIBLE 4) branched chain alpha-keto acid dehydrogenase E1 beta S.X. H.G.
0.67 81.6 At3g45300 823668 IVD (ISOVALERYL-COA-DEHYDROGENASE) Encodes isovaleryl-coenzyme a dehydrogenase. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
65.4 99.8 E-MEXP-1299-raw-cel-1519902498
53.8 99.8 E-MEXP-1299-raw-cel-1519902871
43.8 99.8 GSM226270 phyAphyB_Dark_replicate1 GSE8951 A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
37.5 99.7 GSM226280 YHB_Rc50_replicate1 GSE8951 A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
36.9 99.7 GSM226268 WT(Ler)_Dark_replicate2 GSE8951 A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
35.9 99.7 Rente_1-4_KKO-Control_Rep1_ATH1
35.6 99.7 GSM253165 48h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
32.9 99.7 GSM67112 Arabidopsis_Seedling04 GSE3056 Arabidopsis Pollination Study
32.8 99.7 E-MEXP-1299-raw-cel-1519902780
29.7 99.7 Rente_1-3_WS2-Control_Rep1_ATH1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 6e-2 40 At4g36630 829815 EMB2754 (EMBRYO DEFECTIVE 2754) F:small GTPase regulator activity, binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MFOP C.G. S.X.
0.01 6e-2 40 At3g18100 821335 MYB4R1 (myb domain protein 4R1) Member of the R2R3 transcription factor gene family. C.G. S.X.
0.01 6e-2 40 At1g74870 843826 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MFPOB C.G. S.X.
0.01 9e-1 36 At5g38260 833808 serine/threonine protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 9e-1 36 At5g62050 836325 OXA1 essential factor for protein sorting and assembly into membranes C.G. S.X.
0.01 9e-1 36 At5g20980 832223 ATMS3 (methionine synthase 3) encodes a plastidic methionine synthase, involved in methionine de novo synthesis in the chloroplast C.G. S.X.
0.02 9e-1 36 At4g34840 829636 ATMTN2 F:methylthioadenosine nucleosidase activity;P:nucleoside metabolic process;C:cellular_component unknown;BPO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 8e-39 163 Glycine max GmaAffx.80785.2.S1_at AW780532 - - 3e-39 At4g34030 MCCB (3-METHYLCROTONYL-COA CARBOXYLASE) C.G. S.X.
0.10 3e-14 79 Hordeum vulgare Contig9789_at Contig9789 - - 4e-14 At4g34030 MCCB (3-METHYLCROTONYL-COA CARBOXYLASE) C.G. S.X.
0.30 4e-26 121 Oryza sativa Os08g0424200 AK060716.1 - Methylcrotonyl-CoA carboxylase beta chain,mitochondrial precursor (EC 6.4.1.4)(3-Methylcrotonyl-CoA carboxylase 2) (MCCase betasubunit) (3-methylcrotonyl-CoA:carbon dioxide ligase betasubunit) 2e-26 At4g34030 MCCB (3-METHYLCROTONYL-COA CARBOXYLASE) C.G. S.X.
0.25 5e-40 167 Populus trichocarpa PtpAffx.95932.1.A1_at CV262312 hypothetical protein - 2e-40 At4g34030 MCCB (3-METHYLCROTONYL-COA CARBOXYLASE) C.G. S.X.
0.09 2e-4 48 Triticum aestivum TaAffx.123752.1.S1_x_at CA612764 - - 1e-4 At4g34030 MCCB (3-METHYLCROTONYL-COA CARBOXYLASE) C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1611128_at CF514767 - - 3e-1 At5g46780 VQ motif-containing protein C.G. S.X.
0.07 3e-11 69 Zea mays Zm.5892.1.A1_at BM267559 propionyl-CoA carboxylase beta chain - 3e-11 At4g34030 MCCB (3-METHYLCROTONYL-COA CARBOXYLASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006552 The chemical reactions and pathways resulting in the breakdown of leucine, 2-amino-4-methylpentanoic acid.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00077 Leucine, valine and isoleucine metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00280 Valine, leucine and isoleucine degradation
01100 Metabolic pathways
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