CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g33730

Gene name pathogenesis-related protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.23 19.3 At4g33730 829515 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
0.67 81.6 At1g34510 840353 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
0.55 70.6 At5g22410 832302 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
0.50 65.3 At1g54970 841938 ATPRP1 (PROLINE-RICH PROTEIN 1) encodes a proline-rich protein that is specifically expressed in the root. S.X. H.G.
0.50 65.3 At2g20520 816574 FLA6 (FASCICLIN-LIKE ARABINOGALACTAN 6) fasciclin-like arabinogalactan-protein 6 (Fla6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
182.5 100.0 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
171.9 100.0 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
153.8 99.9 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
115.9 99.9 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
112.3 99.9 GSM184838 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8 GSE7639 Expression analysis of root developmental zones after treatment with salt
103.2 99.9 E-MEXP-722-raw-cel-1062243470
102.1 99.9 GSM226539 L9SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
93.3 99.9 GSM142754 MJ001_ATH1_A5-jones-WT-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
89.6 99.9 GSM226538 L8SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
82.2 99.9 GSM265425 Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.09 7e-5 48 At2g19990 816518 PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE) Encodes a PR-1-like protein homolog that is differentially expressed in resistant compared to susceptible cultivars by powdery mildew infection. The deduced amino acid sequence has 24 amino acids comprising the signal peptide and 140 amino acids of the mature peptide (15 kDa). Northern blot analysis showed accumulation of the corresponding mRNA 12 h after inoculation of resistant barley cultivars with Erysiphe graminis. Though the Genbank record for the cDNA associated to this gene model is called 'PR-1', the sequence actually corresponds to PR-1-like. Expression of this gene is not salicylic-acid responsive. C.G. S.X.
0.05 6e-2 38 At4g25790 828684 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBVA C.G. S.X.
0.04 6e-2 38 At1g01310 839333 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:extracellular region;MPFOB C.G. S.X.
0.01 1e+0 34 At1g15490 838119 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOPMFA C.G. S.X.
0.01 4e+0 32 At5g45520 834588 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVA C.G. S.X.
0.01 4e+0 32 At5g40480 834046 EMB3012 (embryo defective 3012) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MOBP C.G. S.X.
0.01 4e+0 32 At3g55150 824681 ATEXO70H1 (exocyst subunit EXO70 family protein H1) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. C.G. S.X.
0.02 4e+0 32 At2g40750 818670 WRKY54 member of WRKY Transcription Factor; Group III C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-1 36 Glycine max HgAffx.12483.1.S1_at CB375499 - - 2e-1 At4g33730 pathogenesis-related protein, putative C.G. S.X.
0.08 5e-4 44 Hordeum vulgare Contig2211_at Contig2211 - - 1e-3 At4g33730 pathogenesis-related protein, putative C.G. S.X.
0.04 1e-1 38 Oryza sativa Os07g0127700 9635.m00284 - Pathogenesis-related protein 1 7e-2 At4g33730 pathogenesis-related protein, putative C.G. S.X.
0.04 4e-1 36 Populus trichocarpa PtpAffx.223913.1.S1_s_at pmrna42135 hypothetical protein - 2e-1 At4g33730 pathogenesis-related protein, putative C.G. S.X.
0.05 4e-3 42 Triticum aestivum Ta.30739.2.S1_at CA692019 - - 2e-1 At2g19990 PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE) C.G. S.X.
0.03 2e+1 28 Vitis vinifera 1622143_at CF201354.1 - - 4e+0 At4g28870 unknown protein C.G. S.X.
0.04 2e-3 42 Zea mays Zm.9845.1.S1_at BM379918 hypothetical protein LOC100272820 - 6e-3 At4g33730 pathogenesis-related protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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