CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g33720

Gene name pathogenesis-related protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.55 70.6 At4g33720 829514 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
0.86 93.1 At5g19890 832111 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOB S.X. H.G.
0.63 78.1 At3g60270 825198 uclacyanin, putative F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBVFMA S.X. H.G.
0.53 68.6 At3g05950 819765 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFBO S.X. H.G.
0.50 65.3 At3g03670 821193 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOB S.X. H.G.
0.47 61.2 At3g29410 822602 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO S.X. H.G.
0.33 38.1 At1g26250 839166 proline-rich extensin, putative F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA S.X. H.G.
0.25 22.6 At4g08620 826426 SULTR1 High affinity sulfate transporter. Contains STAS domain, essential for sulfur uptake function. Expressed in roots and guard cells. Up-regulated by sulfur deficiency. Down-regulated by cytokinin. Localized to the plasma membrane. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
143.2 99.9 GSM39200 Col_C2 GSE2169 rre1 and rre2 mutants
121.9 99.9 E-MEXP-828-raw-cel-1156922905
116.8 99.9 GSM39214 RRE2_Chitin4 GSE2169 rre1 and rre2 mutants
115.5 99.9 E-MEXP-828-raw-cel-1156922809
105.9 99.9 GSM39213 RRE2_Chitin3 GSE2169 rre1 and rre2 mutants
104.4 99.9 GSM39208 RRE2_C2 GSE2169 rre1 and rre2 mutants
102.9 99.9 GSM39193 RRE1_C3 GSE2169 rre1 and rre2 mutants
91.6 99.9 GSM39194 RRE1_C4 GSE2169 rre1 and rre2 mutants
85.5 99.9 GSM39195 RRE1_Chitin1 GSE2169 rre1 and rre2 mutants
85.4 99.9 GSM39192 RRE1_C2 GSE2169 rre1 and rre2 mutants
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.17 7e-8 57 At2g14580 815945 ATPRB1 pathogenesis related protein, encodes a basic PR1-like protein. Expresses in flowers, roots, and not in leaves and responses to ethylene and methyl jasmonate. Salicylic acid represses gene expression. C.G. S.X.
0.17 3e-7 56 At4g33710 829513 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFBO C.G. S.X.
0.08 4e-6 52 At4g25790 828684 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBVA C.G. S.X.
0.17 1e-2 40 At5g26130 832682 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB C.G. S.X.
0.05 1e-2 40 At4g25780 828683 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB C.G. S.X.
0.03 6e-2 38 At4g36930 829847 SPT (SPATULA) Encodes a transcription factor of the bHLH protein family. Mutants have abnormal, unfused carpels and reduced seed dormancy. C.G. S.X.
0.02 2e-1 36 At3g21780 821732 UGT71B6 (UDP-glucosyl transferase 71B6) Encodes a protein with UDP-glucosyl transferase activity that was shown to preferentially glucosylates abscisic acid (ABA), and not its catabolites. Moreover, UGT71B6 was shown to have a strict preference for the naturally-occurring ABA enantiomer, (+)-ABA, and not its 'unnatural' relative, (-)-ABA. This is in contrast to the other identified UGT genes catalyzing the glucosylation of ABA which were shown to accept both stereoisomers as substrates. C.G. S.X.
0.04 9e-1 34 At5g38317 3771358 LCR58 (Low-molecular-weight cysteine-rich 58) Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. C.G. S.X.
0.01 9e-1 34 At5g39550 833951 VIM3 (VARIANT IN METHYLATION 3) Encodes the VIM3/ORTH1 protein that is similar to VIM1. This protein has an N-terminal PHD domain and two RING domains surrounding an SRA domain. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. This protein functions as an E3 ubiquitin ligase in vitro with members of the UBC8 family E2s. Either of the two RING domains present in the protein can promote ubiquitylation in vitro, but, not the PHD domain. Over-expression of ORTH1/VIM3 leads to decreased levels of FWA methylation, increased levels of FWA transcripts, and delayed flowering. Cen180 repeats are also hypomethylated in plants overexpressing this protein. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-3 44 Glycine max GmaAffx.42847.1.S1_s_at BU578388 - - 5e-12 At2g14580 ATPRB1 C.G. S.X.
0.06 5e-1 34 Hordeum vulgare Contig24957_at Contig24957 - - 1e-3 At4g25790 allergen V5/Tpx-1-related family protein C.G. S.X.
0.04 2e+0 34 Oryza sativa Os02g0786500 AK107467.1 - Pathogenesis-related protein 1 precursor (PR-1) 2e-3 At4g25790 allergen V5/Tpx-1-related family protein C.G. S.X.
0.06 1e+0 34 Populus trichocarpa PtpAffx.214404.1.S1_at pmrna28019 hypothetical protein - 3e-6 At3g19690 pathogenesis-related protein, putative C.G. S.X.
0.06 1e+0 34 Triticum aestivum Ta.19101.1.S1_at CA647221 - - 1e-3 At4g25790 allergen V5/Tpx-1-related family protein C.G. S.X.
0.09 1e-3 42 Vitis vinifera 1612826_at AJ536326.1 - - 4e-3 At4g33720 pathogenesis-related protein, putative C.G. S.X.
0.04 2e+0 32 Zea mays Zm.9845.1.S1_at BM379918 hypothetical protein LOC100272820 - 6e-3 At4g33730 pathogenesis-related protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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