CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g33680

Gene name AGD2 (ABERRANT GROWTH AND DEATH 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.41 52.4 At4g33680 829510 AGD2 (ABERRANT GROWTH AND DEATH 2) Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on chr 4 between L23H3 and nga1139. S.X. H.G.
0.71 84.2 At2g39080 818494 binding / catalytic F:binding, catalytic activity;P:metabolic process;C:chloroplast stroma, chloroplast;BOPA S.X. H.G.
0.63 78.1 At5g04710 830349 aspartyl aminopeptidase, putative F:aminopeptidase activity, zinc ion binding;P:proteolysis;C:chloroplast, vacuole;BOFMPA S.X. H.G.
0.58 73.8 At3g20320 821576 TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2) Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process. S.X. H.G.
0.53 68.6 At5g48630 834920 cyclin family protein F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;MFPO S.X. H.G.
0.50 65.3 At1g19800 838568 TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1) Encodes a permease-Like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. S.X. H.G.
0.50 65.3 At2g19940 816513 N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization F:in 6 functions;P:amino acid metabolic process, response to cadmium ion;C:nucleolus, chloroplast stroma, chloroplast, membrane;BOAFP S.X. H.G.
0.50 65.3 At3g13490 820551 OVA5 (OVULE ABORTION 5) Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype. S.X. H.G.
0.43 55.3 At3g49560 824118 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein F:protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein transport;C:in 6 components;PMO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.0 98.7 GSM133277 RIKEN-GODA1A-M GSE5697 AtGenExpress: Comparison of plant hormone-related mutants
7.0 98.7 GSM183514 MYB29_OE_rep2 GSE7570 ATR1_like_Clade_OE_and_miR
6.9 98.7 GSM133267 RIKEN-GODA5A-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
6.5 98.6 GSM133261 RIKEN-GODA2A-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
6.5 98.6 GSM133254 RIKEN-GODA11B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
6.5 98.6 GSM133278 RIKEN-GODA1B-M GSE5697 AtGenExpress: Comparison of plant hormone-related mutants
6.4 98.6 GSM133265 RIKEN-GODA4A-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
6.3 98.6 GSM133262 RIKEN-GODA2B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
6.2 98.6 GSM133260 RIKEN-GODA1B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
6.2 98.6 GSM133280 RIKEN-GODA2B-M GSE5697 AtGenExpress: Comparison of plant hormone-related mutants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-2 40 At5g56200 835719 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MPOFBV C.G. S.X.
0.02 2e-1 38 At5g24500 832521 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPF C.G. S.X.
0.01 7e-1 36 At5g04895 830371 ATP binding / ATP-dependent helicase/ double-stranded RNA binding / helicase/ nucleic acid binding F:double-stranded RNA binding, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:mitochondrion, intracellular;BMOFPV C.G. S.X.
0.02 7e-1 36 At5g54990 835590 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB C.G. S.X.
0.02 7e-1 36 At5g16380 831499 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO C.G. S.X.
0.01 7e-1 36 At3g48010 823956 ATCNGC16 member of Cyclic nucleotide gated channel family C.G. S.X.
0.01 7e-1 36 At1g64940 842802 CYP89A6 member of CYP89A C.G. S.X.
0.01 7e-1 36 At1g64930 842801 CYP89A7 member of CYP89A C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.61 4e-43 176 Glycine max Gma.14855.1.S1_at BU550191 - - 3e-43 At4g33680 AGD2 (ABERRANT GROWTH AND DEATH 2) C.G. S.X.
0.09 4e-16 85 Hordeum vulgare Contig9314_at Contig9314 - - 5e-16 At4g33680 AGD2 (ABERRANT GROWTH AND DEATH 2) C.G. S.X.
0.36 6e-12 73 Oryza sativa Os03g0299900 AK069075.1 - Aminotransferase, class I and II domain containingprotein 4e-12 At4g33680 AGD2 (ABERRANT GROWTH AND DEATH 2) C.G. S.X.
0.39 3e-56 220 Populus trichocarpa PtpAffx.7892.1.A1_at CA927878 - - 1e-56 At4g33680 AGD2 (ABERRANT GROWTH AND DEATH 2) C.G. S.X.
0.22 2e-4 48 Triticum aestivum Ta.4951.1.S1_at CK171674 - - 3e-4 At4g33680 AGD2 (ABERRANT GROWTH AND DEATH 2) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1620174_at CB341462 - - 2e-1 At1g55475 unknown protein C.G. S.X.
0.16 3e-7 56 Zea mays Zm.6333.1.A1_at AY109180.1 transaminase/ transferase, transferring nitrogenous groups - 5e-7 At4g33680 AGD2 (ABERRANT GROWTH AND DEATH 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009089 The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate.
X GO:0009862 The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00300 Lysine biosynthesis
01064 Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
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