Gene omics information

Query gene ID At4g33680
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4152.4At4g33680829510AGD2 (ABERRANT GROWTH AND DEATH 2)Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on chr 4 between L23H3 and nga1139.S.X.H.G.
0.7184.2At2g39080818494binding / catalyticF:binding, catalytic activity;P:metabolic process;C:chloroplast stroma, chloroplast;BOPAS.X.H.G.
0.6378.1At5g04710830349aspartyl aminopeptidase, putativeF:aminopeptidase activity, zinc ion binding;P:proteolysis;C:chloroplast, vacuole;BOFMPAS.X.H.G.
0.5873.8At3g20320821576TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process.S.X.H.G.
0.5368.6At5g48630834920cyclin family proteinF:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;MFPOS.X.H.G.
0.5065.3At1g19800838568TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1)Encodes a permease-Like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate.S.X.H.G.
0.5065.3At2g19940816513N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerizationF:in 6 functions;P:amino acid metabolic process, response to cadmium ion;C:nucleolus, chloroplast stroma, chloroplast, membrane;BOAFPS.X.H.G.
0.5065.3At3g13490820551OVA5 (OVULE ABORTION 5)Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype.S.X.H.G.
0.4355.3At3g49560824118mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinF:protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein transport;C:in 6 components;PMOS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
7.098.7GSM133277RIKEN-GODA1A-MGSE5697AtGenExpress: Comparison of plant hormone-related mutants
6.998.7GSM133267RIKEN-GODA5A-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
6.598.6GSM133261RIKEN-GODA2A-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
6.598.6GSM133254RIKEN-GODA11B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
6.598.6GSM133278RIKEN-GODA1B-MGSE5697AtGenExpress: Comparison of plant hormone-related mutants
6.498.6GSM133265RIKEN-GODA4A-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
6.398.6GSM133262RIKEN-GODA2B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
6.298.6GSM133260RIKEN-GODA1B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
6.298.6GSM133280RIKEN-GODA2B-MGSE5697AtGenExpress: Comparison of plant hormone-related mutants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.014e-240At5g56200835719zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MPOFBVC.G.S.X.
0.022e-138At5g24500832521unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFC.G.S.X.
0.017e-136At5g04895830371ATP binding / ATP-dependent helicase/ double-stranded RNA binding / helicase/ nucleic acid bindingF:double-stranded RNA binding, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:mitochondrion, intracellular;BMOFPVC.G.S.X.
0.027e-136At5g54990835590zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBC.G.S.X.
0.027e-136At5g16380831499unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POC.G.S.X.
0.017e-136At3g48010823956ATCNGC16member of Cyclic nucleotide gated channel familyC.G.S.X.
0.017e-136At1g64940842802CYP89A6member of CYP89AC.G.S.X.
0.017e-136At1g64930842801CYP89A7member of CYP89AC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.614e-43176Glycine maxGma.14855.1.S1_atBU550191--3e-43At4g33680AGD2 (ABERRANT GROWTH AND DEATH 2)C.G.S.X.
0.094e-1685Hordeum vulgareContig9314_atContig9314--5e-16At4g33680AGD2 (ABERRANT GROWTH AND DEATH 2)C.G.S.X.
0.366e-1273Oryza sativaOs03g0299900AK069075.1-Aminotransferase, class I and II domain containingprotein4e-12At4g33680AGD2 (ABERRANT GROWTH AND DEATH 2)C.G.S.X.
0.393e-56220Populus trichocarpaPtpAffx.7892.1.A1_atCA927878--1e-56At4g33680AGD2 (ABERRANT GROWTH AND DEATH 2)C.G.S.X.
0.222e-448Triticum aestivumTa.4951.1.S1_atCK171674--3e-4At4g33680AGD2 (ABERRANT GROWTH AND DEATH 2)C.G.S.X.
0.022e-136Vitis vinifera1620174_atCB341462--2e-1At1g55475unknown proteinC.G.S.X.
0.163e-756Zea maysZm.6333.1.A1_atAY109180.1transaminase/ transferase, transferring nitrogenous groups-5e-7At4g33680AGD2 (ABERRANT GROWTH AND DEATH 2)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009089The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate.
XGO:0009862The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00300Link to KEGG PATHWAYLysine biosynthesis
01064Link to KEGG PATHWAYBiosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
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