CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g33560

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g33560 829495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.96 97.3 At5g39890 833986 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.92 96.0 At1g33055 840201 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.92 96.0 At5g66985 836833 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.92 96.0 At4g10270 826619 wound-responsive family protein F:molecular_function unknown;P:response to wounding;C:unknown;P S.X. H.G.
0.81 90.4 At2g17850 816295 - F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMF S.X. H.G.
0.81 90.4 At3g02550 821112 LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41) F:unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.79 89.1 At5g10040 830868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.77 88.0 At3g10040 820165 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA S.X. H.G.
0.77 88.0 At4g33070 829444 pyruvate decarboxylase, putative F:in 6 functions;P:unknown;C:membrane;BOFPAMV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
175.0 100.0 GSM142592 DB001_ATH1_A2-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
169.7 100.0 GSM245472 2 hr Hypoxia Stress IP RNA Rep 1 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
150.7 99.9 GSM245482 2 hr Hypoxia Stress IP RNA Rep 2 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
145.6 99.9 GSM245492 2 hr Hypoxia Stress IP RNA Rep 3 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
137.6 99.9 GSM142593 DB001_ATH1_A3-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
128.0 99.9 GSM142594 DB001_ATH1_A4-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
116.8 99.9 GSM142591 DB001_ATH1_A1-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
94.3 99.9 GSM142596 DB001_ATH1_A6-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
93.9 99.9 GSM245474 9 hr Hypoxia Stress IP RNA Rep 1 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
85.8 99.9 GSM245484 9 hr Hypoxia Stress IP RNA Rep 2 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.09 1e-4 46 At2g14070 815892 wound-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 3e-2 38 At1g73850 843721 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;OMFPBV C.G. S.X.
0.02 5e-1 34 At5g45275 2746193 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFBOAM C.G. S.X.
0.01 5e-1 34 At5g20250 832147 DIN10 (DARK INDUCIBLE 10) encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. C.G. S.X.
0.02 5e-1 34 At4g21760 828264 BGLU47 (Beta-glucosidase 47) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA C.G. S.X.
0.04 5e-1 34 At3g59680 825137 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 8e-1 34 Glycine max PsAffx.C22000129_at PsAffx.C22000129 - - 1e+0 At2g11005 glycine-rich protein C.G. S.X.
0.04 3e-1 34 Hordeum vulgare Contig8969_at Contig8969 - - 1e+0 At4g33560 unknown protein C.G. S.X.
0.07 3e-1 36 Oryza sativa OsAffx.17134.1.S1_at - - - 0 C.G. S.X.
0.08 5e-2 38 Populus trichocarpa PtpAffx.211773.1.S1_at pmrna23086 hypothetical protein - 3e-2 At4g33560 unknown protein C.G. S.X.
0.05 6e-1 34 Triticum aestivum Ta.10263.3.S1_x_at CA709057 - - 9e-1 At4g33560 unknown protein C.G. S.X.
0.03 3e+0 30 Vitis vinifera 1618726_at CB973545 hypothetical protein LOC100265140 - 2e-27 At1g06410 ATTPS7 C.G. S.X.
0.05 2e-1 34 Zea mays ZmAffx.1102.1.A1_at AW181177 ran-binding protein 9 - 8e-1 At4g33560 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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