CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g33550

Gene name lipid binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At4g33550 829494 lipid binding F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.40 50.8 At2g37870 818363 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.04 0.9 At2g16005 816096 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO S.X. H.G.
0.01 0.2 At4g12330 826842 CYP706A7 member of CYP706A S.X. H.G.
0.01 0.2 At5g23220 832386 NIC3 (NICOTINAMIDASE 3) F:nicotinamidase activity, catalytic activity;P:metabolic process;C:unknown;BOAFP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
205.3 100.0 GSM131306 AtGen_6-2622_Osmoticstress-Roots-24.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
188.0 100.0 GSM131305 AtGen_6-2621_Osmoticstress-Roots-24.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
127.4 99.9 GSM184933 Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 1 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
111.4 99.9 GSM184935 Arabidopsis, whole roots, 140 mM NaCl, 32 hour, replicate 1 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
105.4 99.9 GSM184934 Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
103.5 99.9 GSM184936 Arabidopsis, whole roots, 140 mM NaCl, 32 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
80.2 99.9 GSM75508 Col-0 0h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
78.8 99.9 GSM75512 Col-0 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
65.7 99.8 GSM131330 AtGen_6-3622_Saltstress-Roots-24.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
64.5 99.8 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 2e-1 36 At4g18170 827542 WRKY28 member of WRKY Transcription Factor; Group II-c C.G. S.X.
0.03 2e-1 36 At3g17170 820974 RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;MOBFPVA C.G. S.X.
0.03 2e-1 36 At1g01860 839283 PFC1 (PALEFACE 1) dimethyladenosine transferase C.G. S.X.
0.02 3e+0 32 At4g27750 828889 ISI1 (IMPAIRED SUCROSE INDUCTION 1) A genetic locus involved in sugar sensing and coordinating carbohydrate synthesis and utilization by the whole plant. Lines carrying mutations in this gene shows restricted carbohydrate allocation to plant growth and seed set, elevated chlorophyll levels, and reduced sugar induction of starch biosynthesis. C.G. S.X.
0.02 3e+0 32 At4g35180 829671 LHT7 (Lys/His transporter 7) F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PFMOB C.G. S.X.
0.01 3e+0 32 At4g31250 829252 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 3e+0 32 At3g58440 825013 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBVA C.G. S.X.
0.03 3e+0 32 At3g47680 823922 DNA binding F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Glycine max HgAffx.17163.1.S1_at CB279193 - - 9e-1 At4g33550 lipid binding C.G. S.X.
0.06 6e+0 30 Hordeum vulgare HW04H04u_at HW04H04u - - 3e+0 At4g33550 lipid binding C.G. S.X.
0.05 6e+0 32 Oryza sativa OsAffx.30228.1.S1_at - - - 0 C.G. S.X.
0.05 1e+0 34 Populus trichocarpa PtpAffx.200149.1.S1_at pmrna281 hypothetical protein - 6e-1 At4g33550 lipid binding C.G. S.X.
0.04 2e-1 36 Triticum aestivum TaAffx.28757.1.S1_at CA656495 - - 2e-1 At4g33550 lipid binding C.G. S.X.
0.04 9e-1 32 Vitis vinifera 1610165_at CF204000.1 - - 2e+0 At4g33550 lipid binding C.G. S.X.
0.04 1e+0 32 Zea mays ZmAffx.1113.1.A1_at AI600810 Hypothetical protein LOC100216906 - 4e+0 At4g33550 lipid binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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