CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g33430

Gene name BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At4g33430 829480 BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) Leu-rich receptor Serine/threonine protein kinase. Component of BR signaling that interacts with BRI1 in vitro and in vivo to form a heterodimer. Brassinolide-dependent association of BRI1 and BAK1 in vivo. Phosphorylation of both BRI1 and BAK1 on Thr residues was BR dependent. Although BAK1 and BRI1 alone localize in the plasma membrane, when BAK1 and BRI1 are coexpressed, the heterodimer BAK1/BRI1 they form is localized in the endosome. S.X. H.G.
0.67 81.6 At3g54100 824577 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.57 73.8 At3g21630 821717 CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1) LysM receptor-like kinase. Essential in the perception and transduction of the chitin oligosaccharide elicitor. Involved in chitin-mediated plant innate immunity. Located in the plasma membrane. S.X. H.G.
0.50 65.3 At1g17500 838324 ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, ATP biosynthetic process, phospholipid transport;C:integral to membrane, membrane;MBOFPAV S.X. H.G.
0.50 65.3 At3g28450 822474 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast, plasma membrane, membrane;PMOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.8 99.7 GSM142829 GM001_ATH1_A11-Torres-5N3 GSE6176 Impact of Type III effectors on plant defense responses
18.9 99.5 GSM128686 Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
18.0 99.5 GSM142853 MG001_ATH1_A6-Torres-2N6 GSE6176 Impact of Type III effectors on plant defense responses
17.9 99.5 GSM128683 Underwood_1-36_E.coli-0157-H7-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
17.9 99.5 GSM142838 MG001_ATH1_A17-Torres-6N3 GSE6176 Impact of Type III effectors on plant defense responses
17.8 99.5 GSM142839 MG001_ATH1_A18-Torres-6N6 GSE6176 Impact of Type III effectors on plant defense responses
16.8 99.5 E-NASC-76-raw-cel-1359878900
16.7 99.5 E-NASC-76-raw-cel-1359879106
16.4 99.5 GSM128672 Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
16.3 99.5 GSM142837 MG001_ATH1_A16-Torres-6N1 GSE6176 Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.67 0 734 At2g13790 815862 SERK4 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 4) F:protein binding, transmembrane receptor protein serine/threonine kinase activity, protein kinase activity;P:response to salt stress, cell death, protein amino acid phosphorylation, response to chitin;C:endomembrane system;PMOBFVA C.G. S.X.
0.63 4e-151 535 At2g13800 815863 SERK5 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 5) F:transmembrane receptor protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.48 4e-40 167 At1g34210 840320 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. C.G. S.X.
0.43 1e-30 135 At1g71830 843513 SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later C.G. S.X.
0.12 4e-12 73 At2g23950 816928 leucine-rich repeat family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.11 7e-11 69 At5g65240 836649 kinase F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
0.09 3e-10 67 At5g45780 834618 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.10 3e-10 67 At5g10290 830893 leucine-rich repeat family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.46 1e-102 375 Glycine max Gma.3083.1.S1_at BE474466 - - 3e-65 At4g33430 BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) C.G. S.X.
0.28 4e-35 149 Hordeum vulgare Contig5422_at Contig5422 - - 1e-39 At1g71830 SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) C.G. S.X.
0.33 3e-42 174 Oryza sativa Os08g0174700 AY463361.1 - Somatic embryogenesis receptor-like kinase 2 2e-42 At4g33430 BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) C.G. S.X.
0.47 5e-108 393 Populus trichocarpa PtpAffx.221277.1.S1_at pmrna38042 hypothetical protein - 2e-131 At1g34210 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) C.G. S.X.
0.23 1e-27 125 Triticum aestivum Ta.12817.1.S1_at BT009426.1 - - 1e-34 At1g71830 SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) C.G. S.X.
0.40 3e-109 395 Vitis vinifera 1606662_at CB979542 similar to somatic embryogenesis receptor kinase - 6e-59 At1g34210 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) C.G. S.X.
0.33 2e-30 133 Zea mays Zm.7889.1.A1_at AW091189 Somatic embryogenesis receptor-like kinase3 - 7e-30 At4g33430 BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0008219 The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.
X GO:0009742 A series of molecular signals mediated by the detection of brassinosteroid.
X GO:0002229 Reactions triggered in response to the presence of oomycetes that act to protect the cell or organism.
X GO:0042742 Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
X GO:0050832 Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
X GO:0016049 The process by which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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