Gene omics information

Query gene ID At4g33230
Gene name pectinesterase family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8994.6At4g33230829459pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOS.X.H.G.
0.8994.6At1g50610841483leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOFBVAS.X.H.G.
0.8391.4At3g18810821414protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OMBPFVAS.X.H.G.
0.8290.9At5g18910832009protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:peroxisome;MPOBFVAS.X.H.G.
0.8089.8At2g21480816687protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.7888.6At4g07960826301ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12)encodes a gene similar to cellulose synthaseS.X.H.G.
0.7788.0At1g25240839107epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedF:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat, mitochondrion;PMFBAOS.X.H.G.
0.7788.0At2g33460817911RIC1 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1)encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC3(family subgroup III). RIC1 is localized to the apical region of the plasma membrane in pollen tube and mutation analyses indicate that this localization is dependent on ROP1 binding. Gene is expressed in all tissues examined.Analysis of overexpression and loss of function mutants indicates a role in cortical microtubule organization during pavement cell morphogenesis.S.X.H.G.
0.7687.4At1g02000839289GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2)UDP-D-glucuronate 4-epimeraseS.X.H.G.
0.7687.4At5g05070830389zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
294.3100.0E-MEXP-1138-raw-cel-1432772714
234.3100.0E-MEXP-1138-raw-cel-1432772522
197.9100.0GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
181.9100.0E-MEXP-1138-raw-cel-1432772746
172.2100.0E-MEXP-1138-raw-cel-1432772874
168.9100.0GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
164.9100.0E-MEXP-1138-raw-cel-1432773354
155.999.9E-MEXP-1138-raw-cel-1432772938
152.199.9E-MEXP-1138-raw-cel-1432772650
149.199.9E-MEXP-1138-raw-cel-1432772682
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.567e-125448At2g26450817185pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOC.G.S.X.
0.042e-552At3g62170825390VGDH2 (Vanguard 1 homolog 2)F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOC.G.S.X.
0.011e-242At1g19110838494inter-alpha-trypsin inhibitor heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;MBOPFAC.G.S.X.
0.016e-240At3g14300820650ATPMEPCRCF:pectinesterase activity;P:cell wall modification;C:cell wall;PBFMAC.G.S.X.
0.022e-138At5g28220832898bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MFOPABC.G.S.X.
0.012e-138At3g10710820240pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMC.G.S.X.
0.012e-138At2g47550819368pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOC.G.S.X.
0.022e-138At1g64355842742unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPC.G.S.X.
0.022e-138At1g11370837679pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFAMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.028e-240Glycine maxGmaAffx.71146.1.S1_atBM527181--8e-2At2g47040VGD1 (VANGUARD1)C.G.S.X.
0.017e+032Hordeum vulgarebaak1h04_s_atbaak1h04--3e+0At5g03370acylphosphatase familyC.G.S.X.
0.022e+036Oryza sativaOsAffx.1292.1.S1_at---0C.G.S.X.
0.114e-1067Populus trichocarpaPtpAffx.214087.1.S1_atpmrna27425hypothetical protein-3e-10At4g33230pectinesterase family proteinC.G.S.X.
0.014e+034Triticum aestivumTaAffx.39302.1.A1_atBG909701--1e+1At5g53860emb2737 (embryo defective 2737)C.G.S.X.
0.033e-136Vitis vinifera1622450_atCB970586--5e-7At2g45220pectinesterase family proteinC.G.S.X.
0.014e-136Zea maysZm.17504.1.A1_atBG873838--5e-1At2g37150zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0042545The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00400Link to KaPPA-View 4Homogalacturonan degradation
00422Link to KaPPA-View 4Carbohydrate esterases
00442Link to KaPPA-View 4Rhamnogalacturonan II degradation



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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