CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g33230

Gene name pectinesterase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.89 94.6 At4g33230 829459 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO S.X. H.G.
0.89 94.6 At1g50610 841483 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOFBVA S.X. H.G.
0.83 91.4 At3g18810 821414 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OMBPFVA S.X. H.G.
0.82 90.9 At5g18910 832009 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:peroxisome;MPOBFVA S.X. H.G.
0.80 89.8 At2g21480 816687 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.78 88.6 At4g07960 826301 ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12) encodes a gene similar to cellulose synthase S.X. H.G.
0.77 88.0 At1g25240 839107 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat, mitochondrion;PMFBAO S.X. H.G.
0.77 88.0 At2g33460 817911 RIC1 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1) encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC3(family subgroup III). RIC1 is localized to the apical region of the plasma membrane in pollen tube and mutation analyses indicate that this localization is dependent on ROP1 binding. Gene is expressed in all tissues examined.Analysis of overexpression and loss of function mutants indicates a role in cortical microtubule organization during pavement cell morphogenesis. S.X. H.G.
0.76 87.4 At1g02000 839289 GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2) UDP-D-glucuronate 4-epimerase S.X. H.G.
0.76 87.4 At5g05070 830389 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
294.3 100.0 E-MEXP-1138-raw-cel-1432772714
234.3 100.0 E-MEXP-1138-raw-cel-1432772522
197.9 100.0 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
181.9 100.0 E-MEXP-1138-raw-cel-1432772746
172.2 100.0 E-MEXP-1138-raw-cel-1432772874
168.9 100.0 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
164.9 100.0 E-MEXP-1138-raw-cel-1432773354
155.9 99.9 E-MEXP-1138-raw-cel-1432772938
152.1 99.9 E-MEXP-1138-raw-cel-1432772650
149.1 99.9 E-MEXP-1138-raw-cel-1432772682
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.56 7e-125 448 At2g26450 817185 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.04 2e-5 52 At3g62170 825390 VGDH2 (Vanguard 1 homolog 2) F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.01 1e-2 42 At1g19110 838494 inter-alpha-trypsin inhibitor heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;MBOPFA C.G. S.X.
0.01 6e-2 40 At3g14300 820650 ATPMEPCRC F:pectinesterase activity;P:cell wall modification;C:cell wall;PBFMA C.G. S.X.
0.02 2e-1 38 At5g28220 832898 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPAB C.G. S.X.
0.01 2e-1 38 At3g10710 820240 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM C.G. S.X.
0.01 2e-1 38 At2g47550 819368 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.02 2e-1 38 At1g64355 842742 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP C.G. S.X.
0.02 2e-1 38 At1g11370 837679 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFAM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-2 40 Glycine max GmaAffx.71146.1.S1_at BM527181 - - 8e-2 At2g47040 VGD1 (VANGUARD1) C.G. S.X.
0.01 7e+0 32 Hordeum vulgare baak1h04_s_at baak1h04 - - 3e+0 At5g03370 acylphosphatase family C.G. S.X.
0.02 2e+0 36 Oryza sativa OsAffx.1292.1.S1_at - - - 0 C.G. S.X.
0.11 4e-10 67 Populus trichocarpa PtpAffx.214087.1.S1_at pmrna27425 hypothetical protein - 3e-10 At4g33230 pectinesterase family protein C.G. S.X.
0.01 4e+0 34 Triticum aestivum TaAffx.39302.1.A1_at BG909701 - - 1e+1 At5g53860 emb2737 (embryo defective 2737) C.G. S.X.
0.03 3e-1 36 Vitis vinifera 1622450_at CB970586 - - 5e-7 At2g45220 pectinesterase family protein C.G. S.X.
0.01 4e-1 36 Zea mays Zm.17504.1.A1_at BG873838 - - 5e-1 At2g37150 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0042545 The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00422 Carbohydrate esterases
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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