CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g33160

Gene name ubiquitin-protein ligase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g33160 829453 ubiquitin-protein ligase F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;P S.X. H.G.
0.36 43.6 At5g38380 833821 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO S.X. H.G.
0.33 38.1 At5g62600 836381 transportin-SR-related F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MFPOB S.X. H.G.
0.31 33.8 At3g12680 820448 HUA1 (ENHANCER OF AG-4 1) Member of the floral homeotic AGAMOUS pathway. S.X. H.G.
0.20 14.4 At3g05040 819666 HST (HASTY) Encodes member of importin/exportin family. Involved in timing of shoot maturation. Involved in miRNA transport. Mutants flower early and have small, curled leaves and reduced abundance of certain miRNA species. S.X. H.G.
0.02 0.4 At5g11040 830971 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
89.5 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
56.3 99.8 GSM133761 Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
46.5 99.8 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
28.6 99.7 GSM205156 protoplast_controlDNA_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
25.5 99.7 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
24.2 99.6 GSM142655 MC002_ATH1_A11.3-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
23.4 99.6 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
23.3 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.9 99.5 GSM134208 Murray_3-4_D7-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
18.7 99.5 GSM142653 MC002_ATH1_A11.1-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-2 42 At3g01560 821110 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBVA C.G. S.X.
0.02 4e-2 40 At5g62190 836340 PRH75 DEAD/DEAH box RNA helicase PRH75 C.G. S.X.
0.01 4e-2 40 At5g65700 836699 BAM1 (BARELY ANY MERISTEM 1) Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. C.G. S.X.
0.02 4e-2 40 At4g33690 829511 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOFP C.G. S.X.
0.02 4e-2 40 At4g40060 830169 ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. C.G. S.X.
0.01 4e-2 40 At3g18710 821402 PUB29 (PLANT U-BOX 29) Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. C.G. S.X.
0.01 4e-2 40 At3g54930 824658 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative F:protein phosphatase type 2A regulator activity;P:signal transduction;C:chloroplast, protein phosphatase type 2A complex;MPOF C.G. S.X.
0.02 4e-2 40 At2g32360 817797 ubiquitin family protein F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MOFPVBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max GmaAffx.55607.1.S1_at BM567859 - - 8e-1 At2g28420 lactoylglutathione lyase family protein / glyoxalase I family protein C.G. S.X.
0.02 5e+0 32 Hordeum vulgare Contig23275_at Contig23275 - - 3e-5 At3g14990 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative C.G. S.X.
0.01 1e+0 36 Oryza sativa Os07g0606900 CA756340 - Heavy metal transport/detoxification proteindomain containing protein 5e+0 At5g25940 early nodulin-related C.G. S.X.
0.02 9e-1 36 Populus trichocarpa PtpAffx.221656.1.S1_at pmrna38651 hypothetical protein - 3e-4 At3g17950 unknown protein C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.60679.1.S1_at CA484429 - - 4e+0 At4g00880 auxin-responsive family protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1607964_s_at BM437259 hypothetical protein LOC100257686 - 4e-1 At5g08410 FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2) C.G. S.X.
0.02 1e+0 34 Zea mays Zm.2963.1.A1_at BG842411 naringenin,2-oxoglutarate 3-dioxygenase - 6e+0 At2g14247 Expressed protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006511 The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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