Gene omics information

Query gene ID At4g33050
Gene name EDA39 (embryo sac development arrest 39)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.146.8At4g33050829442EDA39 (embryo sac development arrest 39)F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFOS.X.H.G.
0.6075.7At5g26920832750CBP60G (CAM-BINDING PROTEIN 60-LIKE.G)Encodes a calmodulin-binding protein CBP60g (calmodulin binding protein 60-like.g). The calmodulin-binding domain is located near the N-terminus; calmodulin binding is dependent on Ca(2+). Inducible by both bacterial pathogen and MAMP (microbe-associated molecular pattern) treatments. Bacterial growth is enhanced in cbp60g mutants. cbp60g mutants also show defects in salicylic acid (SA) accumulation and SA signaling.S.X.H.G.
0.5065.3At5g41740834177disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFAS.X.H.G.
0.3541.6At4g23810828481WRKY53member of WRKY Transcription Factor; Group IIIS.X.H.G.
0.2726.2At5g52750835352heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
71.599.9E-MEXP-807-raw-cel-1173273144
70.199.9E-MEXP-807-raw-cel-1173273252
58.399.8E-MEXP-807-raw-cel-1173273116
56.299.8GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
50.999.8GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
50.899.8E-MEXP-807-raw-cel-1173273088
50.799.8GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
45.999.8E-MEXP-807-raw-cel-1173272948
45.499.8E-MEXP-807-raw-cel-1173273060
45.099.8E-MEXP-1094-raw-cel-1379507313
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.579e-114410At2g26190817159calmodulin-binding family proteinF:calmodulin binding;P:N-terminal protein myristoylation;C:unknown;PFOBC.G.S.X.
0.042e-448At3g58480825017calmodulin-binding family proteinF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PFOMBC.G.S.X.
0.066e-446At5g57010835803calmodulin-binding family proteinF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PFBOC.G.S.X.
0.049e-342At3g52870824453calmodulin-binding family proteinF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PFBOC.G.S.X.
0.026e-136At5g41490834150F-box family proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PFC.G.S.X.
0.016e-136At5g06400830528pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.084e-1273Glycine maxGma.13076.1.S1_atBQ473576--9e-13At2g26190calmodulin-binding family proteinC.G.S.X.
0.041e+034Hordeum vulgareContig18490_atContig18490--7e-5At3g52870calmodulin-binding family proteinC.G.S.X.
0.075e-654Oryza sativaOs.6364.2.S1_at---0C.G.S.X.
0.194e-1583Populus trichocarpaPtp.5015.1.S1_s_atCV242363hypothetical protein-5e-24At4g33050EDA39 (embryo sac development arrest 39)C.G.S.X.
0.034e-240Triticum aestivumTa.24422.1.S1_s_atBJ320530--4e-17At1g54080oligouridylate-binding protein, putativeC.G.S.X.
0.033e+032Vitis vinifera1619340_atCF403903hypothetical protein LOC100243938-1e-12At5g20190bindingC.G.S.X.
0.021e+034Zea maysZm.13345.6.A1_x_atCA402028hypothetical protein LOC100279020-2e-2At2g30310GDSL-motif lipase/hydrolase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010200A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
XGO:0010197The merging of the polar nuclei, the two nuclei contained within the same cell that are created from the mitotic division of the megaspore during angiosperm reproduction. Polar nuclear fusion takes place in the ovule, forming in the fusion nucleus and giving rise to the endosperm when fertilized.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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