CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g33050

Gene name EDA39 (embryo sac development arrest 39)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.14 6.8 At4g33050 829442 EDA39 (embryo sac development arrest 39) F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFO S.X. H.G.
0.60 75.7 At5g26920 832750 CBP60G (CAM-BINDING PROTEIN 60-LIKE.G) Encodes a calmodulin-binding protein CBP60g (calmodulin binding protein 60-like.g). The calmodulin-binding domain is located near the N-terminus; calmodulin binding is dependent on Ca(2+). Inducible by both bacterial pathogen and MAMP (microbe-associated molecular pattern) treatments. Bacterial growth is enhanced in cbp60g mutants. cbp60g mutants also show defects in salicylic acid (SA) accumulation and SA signaling. S.X. H.G.
0.50 65.3 At5g41740 834177 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFA S.X. H.G.
0.35 41.6 At4g23810 828481 WRKY53 member of WRKY Transcription Factor; Group III S.X. H.G.
0.27 26.2 At5g52750 835352 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
71.5 99.9 E-MEXP-807-raw-cel-1173273144
70.1 99.9 E-MEXP-807-raw-cel-1173273252
58.3 99.8 E-MEXP-807-raw-cel-1173273116
56.2 99.8 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
50.9 99.8 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
50.8 99.8 E-MEXP-807-raw-cel-1173273088
50.7 99.8 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
45.9 99.8 E-MEXP-807-raw-cel-1173272948
45.4 99.8 E-MEXP-807-raw-cel-1173273060
45.0 99.8 E-MEXP-1094-raw-cel-1379507313
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.57 9e-114 410 At2g26190 817159 calmodulin-binding family protein F:calmodulin binding;P:N-terminal protein myristoylation;C:unknown;PFOB C.G. S.X.
0.04 2e-4 48 At3g58480 825017 calmodulin-binding family protein F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PFOMB C.G. S.X.
0.06 6e-4 46 At5g57010 835803 calmodulin-binding family protein F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PFBO C.G. S.X.
0.04 9e-3 42 At3g52870 824453 calmodulin-binding family protein F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PFBO C.G. S.X.
0.02 6e-1 36 At5g41490 834150 F-box family protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.01 6e-1 36 At5g06400 830528 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 4e-12 73 Glycine max Gma.13076.1.S1_at BQ473576 - - 9e-13 At2g26190 calmodulin-binding family protein C.G. S.X.
0.04 1e+0 34 Hordeum vulgare Contig18490_at Contig18490 - - 7e-5 At3g52870 calmodulin-binding family protein C.G. S.X.
0.07 5e-6 54 Oryza sativa Os.6364.2.S1_at - - - 0 C.G. S.X.
0.19 4e-15 83 Populus trichocarpa Ptp.5015.1.S1_s_at CV242363 hypothetical protein - 5e-24 At4g33050 EDA39 (embryo sac development arrest 39) C.G. S.X.
0.03 4e-2 40 Triticum aestivum Ta.24422.1.S1_s_at BJ320530 - - 4e-17 At1g54080 oligouridylate-binding protein, putative C.G. S.X.
0.03 3e+0 32 Vitis vinifera 1619340_at CF403903 hypothetical protein LOC100243938 - 1e-12 At5g20190 binding C.G. S.X.
0.02 1e+0 34 Zea mays Zm.13345.6.A1_x_at CA402028 hypothetical protein LOC100279020 - 2e-2 At2g30310 GDSL-motif lipase/hydrolase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010200 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
X GO:0010197 The merging of the polar nuclei, the two nuclei contained within the same cell that are created from the mitotic division of the megaspore during angiosperm reproduction. Polar nuclear fusion takes place in the ovule, forming in the fusion nucleus and giving rise to the endosperm when fertilized.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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