Gene omics information

Query gene ID At4g32950
Gene name protein phosphatase 2C, putative / PP2C, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g32950829432protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBVS.X.H.G.
0.2522.6At2g48080819420oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.103.4At1g66440842962DC1 domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;PFOS.X.H.G.
0.040.9At3g27170822336CLC-B (CHLORIDE CHANNEL B)member of Anion channel protein familyS.X.H.G.
0.000.0At1g63550842660-F:unknown;P:unknown;C:anchored to membrane;POVMBFAS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
431.5100.0GSM231203chl1 at T0.5, biological rep2GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
295.2100.0GSM231196wild-type at T0.5, biological rep1GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
283.9100.0GSM231197wild-type at T0.5, biological rep2GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
248.0100.0GSM231202chl1 at T0.5, biological rep1GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
239.3100.0GSM157305Gan_1-1_wildtype-nitrate-minus(WNM)_Rep1_ATH1GSE6824Identification of genes involved in nutritional regulation of root architecture
222.4100.0GSM157306Gan_1-3_wildtype-nitrate-minus(WNM)_Rep2_ATH1GSE6824Identification of genes involved in nutritional regulation of root architecture
120.699.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
102.899.9GSM184545Whole roots 2hr KNO3 treated then frozen, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
93.599.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
92.899.9GSM184533Protoplasted root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.015e-446At4g25540828659MSH3 (Arabidopsis homolog of DNA mismatch repair protein MSH3)encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G).C.G.S.X.
0.021e-138At5g26010832670catalytic/ protein serine/threonine phosphataseF:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PMOFBVC.G.S.X.
0.021e-138At3g02750820909protein phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:chloroplast;PMOFBVC.G.S.X.
0.025e-136At5g58480835961glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFOC.G.S.X.
0.025e-136At2g25060817044plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PC.G.S.X.
0.022e+034At5g01700831695protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFVBC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-138Glycine maxGmaAffx.75245.1.S1_atAI737035--2e-11At5g27930protein phosphatase 2C, putative / PP2C, putativeC.G.S.X.
0.039e-134Hordeum vulgareHVSMEf0021G22r2_atHVSMEf0021G22r2--3e-1At3g01070plastocyanin-like domain-containing proteinC.G.S.X.
0.056e-240Oryza sativaOs12g01086009640.m00078-Protein phosphatase 2C-like domain containingprotein5e-2At4g32950protein phosphatase 2C, putative / PP2C, putativeC.G.S.X.
0.067e-446Populus trichocarpaPtpAffx.61059.1.S1_atDN487447hypothetical protein-6e-1At5g26010catalytic/ protein serine/threonine phosphataseC.G.S.X.
0.032e+034Triticum aestivumTa.6517.1.S1_x_atBQ171274--2e+0At4g32950protein phosphatase 2C, putative / PP2C, putativeC.G.S.X.
0.036e-134Vitis vinifera1615166_atCB917504--3e+0At3g51020unknown proteinC.G.S.X.
0.033e+032Zea maysZmAffx.45.1.A1_atAI664925amino acid permease-8e-1At5g52160protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage