CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g32950

Gene name protein phosphatase 2C, putative / PP2C, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g32950 829432 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBV S.X. H.G.
0.25 22.6 At2g48080 819420 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.10 3.4 At1g66440 842962 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PFO S.X. H.G.
0.04 0.9 At3g27170 822336 CLC-B (CHLORIDE CHANNEL B) member of Anion channel protein family S.X. H.G.
0.00 0.0 At1g63550 842660 - F:unknown;P:unknown;C:anchored to membrane;POVMBFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
431.5 100.0 GSM231203 chl1 at T0.5, biological rep2 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
295.2 100.0 GSM231196 wild-type at T0.5, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
283.9 100.0 GSM231197 wild-type at T0.5, biological rep2 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
248.0 100.0 GSM231202 chl1 at T0.5, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
239.3 100.0 GSM157305 Gan_1-1_wildtype-nitrate-minus(WNM)_Rep1_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
222.4 100.0 GSM157306 Gan_1-3_wildtype-nitrate-minus(WNM)_Rep2_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
120.6 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
102.8 99.9 GSM184545 Whole roots 2hr KNO3 treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
93.5 99.9 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
92.8 99.9 GSM184533 Protoplasted root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 5e-4 46 At4g25540 828659 MSH3 (Arabidopsis homolog of DNA mismatch repair protein MSH3) encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G). C.G. S.X.
0.02 1e-1 38 At5g26010 832670 catalytic/ protein serine/threonine phosphatase F:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PMOFBV C.G. S.X.
0.02 1e-1 38 At3g02750 820909 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:chloroplast;PMOFBV C.G. S.X.
0.02 5e-1 36 At5g58480 835961 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO C.G. S.X.
0.02 5e-1 36 At2g25060 817044 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;P C.G. S.X.
0.02 2e+0 34 At5g01700 831695 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFVB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Glycine max GmaAffx.75245.1.S1_at AI737035 - - 2e-11 At5g27930 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.03 9e-1 34 Hordeum vulgare HVSMEf0021G22r2_at HVSMEf0021G22r2 - - 3e-1 At3g01070 plastocyanin-like domain-containing protein C.G. S.X.
0.05 6e-2 40 Oryza sativa Os12g0108600 9640.m00078 - Protein phosphatase 2C-like domain containingprotein 5e-2 At4g32950 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.06 7e-4 46 Populus trichocarpa PtpAffx.61059.1.S1_at DN487447 hypothetical protein - 6e-1 At5g26010 catalytic/ protein serine/threonine phosphatase C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.6517.1.S1_x_at BQ171274 - - 2e+0 At4g32950 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.03 6e-1 34 Vitis vinifera 1615166_at CB917504 - - 3e+0 At3g51020 unknown protein C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.45.1.A1_at AI664925 amino acid permease - 8e-1 At5g52160 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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