Gene omics information

Query gene ID At4g32940
Gene name GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At4g32940829431GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death.S.X.H.G.
0.8693.1At5g18130831931unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.3338.1At5g13800831225hydrolase, alpha/beta fold family proteinF:hydrolase activity, pheophytinase activity;P:chlorophyll catabolic process;C:chloroplast;BOPMAFS.X.H.G.
0.2014.4At1g21000838694zinc-binding family proteinF:binding;P:biological_process unknown;C:unknown;PS.X.H.G.
0.103.4At1g01240839274unknown proteinF:unknown;P:N-terminal protein myristoylation;C:unknown;PMBOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
35.499.7GSM131538ATGE_25_BGSE5630AtGenExpress: Developmental series (leaves)
30.499.7GSM131537ATGE_25_AGSE5630AtGenExpress: Developmental series (leaves)
29.399.7E-ATMX-32-raw-cel-1562974443
28.699.7E-ATMX-32-raw-cel-1562974621
28.199.7E-TABM-209-raw-cel-1316546487
27.699.7GSM131539ATGE_25_CGSE5630AtGenExpress: Developmental series (leaves)
26.299.7GSM133732Buchanan-Wollaston_A-4-bwoll-C5S_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescence
25.599.7E-ATMX-32-raw-cel-1562974595
25.199.6E-ATMX-32-raw-cel-1562974409
24.999.6E-ATMX-32-raw-cel-1562974681
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.700749At2g25940817135ALPHA-VPE (alpha-vacuolar processing enzyme)Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions.C.G.S.X.
0.053e-654At1g62710842569BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins.C.G.S.X.
0.048e-446At3g20210821565DELTA-VPEEncodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.C.G.S.X.
0.011e-242At3g62360825409carbohydrate bindingF:carbohydrate binding;P:unknown;C:endoplasmic reticulum, plasma membrane, plant-type cell wall;MBOPAC.G.S.X.
0.015e-240At3g24660822062TMKL1 (transmembrane kinase-like 1)member of Receptor kinase-like protein familyC.G.S.X.
0.012e-138At5g04540830333phosphatase/ protein tyrosine phosphataseF:phosphatase activity, protein tyrosine phosphatase activity;P:dephosphorylation;C:unknown;MOFPC.G.S.X.
0.017e-136At3g05380819702DNA binding / transcription factorF:transcription factor activity, DNA binding;P:unknown;C:unknown;MOBFPVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.322e-54214Glycine maxGma.1756.1.S1_atBF324935vacuolar processing enzyme 2-2e-66At2g25940ALPHA-VPE (alpha-vacuolar processing enzyme)C.G.S.X.
0.092e-654Hordeum vulgareContig2779_atContig2779--2e-6At4g32940GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)C.G.S.X.
0.134e-1687Oryza sativaOs01g0559600AB025310.1-Vacuolar processing enzyme, alpha-isozymeprecursor (EC 3.4.22.-) (Alpha-VPE)3e-16At4g32940GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)C.G.S.X.
0.432e-91337Populus trichocarpaPtp.5984.1.S1_s_atCV229997hypothetical protein-2e-91At4g32940GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)C.G.S.X.
0.153e-963Triticum aestivumTa.30798.2.S1_atCK162752--5e-9At4g32940GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)C.G.S.X.
0.357e-57220Vitis vinifera1621718_atBQ794503hypothetical protein LOC100244137-5e-26At2g25940ALPHA-VPE (alpha-vacuolar processing enzyme)C.G.S.X.
0.151e-1687Zea maysZm.255.1.A1_atBM080474Legumain-like protease-3e-16At4g32940GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006624The posttranslational modification of proteins in the vacuole, including proteolytic cleavage of precursors to form active enzymes.
CGO:0006508The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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