CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g32650

Gene name ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At4g32650 829400 ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1) A member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1. S.X. H.G.
0.77 88.0 At2g21045 816639 - F:unknown;P:aging;C:unknown;BOPAFM S.X. H.G.
0.67 81.6 At2g42350 818836 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
0.65 79.6 At2g44380 819045 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;PMO S.X. H.G.
0.61 76.7 At1g78000 844135 SULTR1 Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes. S.X. H.G.
0.57 73.8 At2g29995 817550 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.57 73.8 At5g05400 830422 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFA S.X. H.G.
0.56 73.0 At1g31885 840079 transporter F:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAV S.X. H.G.
0.53 68.6 At3g45410 823679 lectin protein kinase family protein encodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor. S.X. H.G.
0.48 62.5 At1g29280 839802 WRKY65 member of WRKY Transcription Factor; Group II-e S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
59.0 99.8 GSM75519 slr-1 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
49.4 99.8 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
47.1 99.8 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
46.3 99.8 GSM184934 Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
43.0 99.8 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
40.2 99.8 GSM75516 slr-1 0h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
35.9 99.7 GSM184936 Arabidopsis, whole roots, 140 mM NaCl, 32 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
34.4 99.7 GSM75514 Col-0 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
33.8 99.7 GSM265413 Arabidopsis, whole roots, -Fe, replicate 3 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
33.1 99.7 GSM184935 Arabidopsis, whole roots, 140 mM NaCl, 32 hour, replicate 1 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 3e-1 38 At4g00630 825834 KEA2 member of Putative potassium transporter family C.G. S.X.
0.01 3e-1 38 At4g34180 829566 cyclase family protein F:molecular_function unknown;P:response to salt stress;C:cell wall;BOAPM C.G. S.X.
0.01 3e-1 38 At2g18193 816333 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV C.G. S.X.
0.02 3e-1 38 At1g49405 841364 integral membrane protein, putative F:molecular_function unknown;P:biological_process unknown;C:membrane;P C.G. S.X.
0.01 1e+0 36 At5g28440 832931 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;P C.G. S.X.
0.01 1e+0 36 At5g13110 831150 G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2) Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root. C.G. S.X.
0.01 1e+0 36 At5g22070 832268 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-2 40 Glycine max GmaAffx.93630.1.S1_s_at CF808136 - - 9e-2 At5g09850 transcription elongation factor-related C.G. S.X.
0.01 8e-3 42 Hordeum vulgare Contig7429_s_at Contig7429 - - 5e-8 At2g18162 CPuORF1 (Conserved peptide upstream open reading frame 1) C.G. S.X.
0.03 3e-5 52 Oryza sativa OsAffx.15422.2.S1_at - - - 0 C.G. S.X.
0.09 2e-9 65 Populus trichocarpa PtpAffx.206751.1.S1_x_at pmrna13399 hypothetical protein - 1e-9 At4g32650 ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1) C.G. S.X.
0.01 3e-1 38 Triticum aestivum TaAffx.23818.1.S1_at CA729933 - - 7e-8 At3g19340 - C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1611995_at BQ792914 - - 5e-1 At5g65040 senescence-associated protein-related C.G. S.X.
0.02 1e-1 38 Zea mays Zm.13911.1.S1_at AY109626.1 potassium channel protein ZMK2 - 6e-3 At4g18290 KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009624 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a nematode.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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