CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g32500

Gene name AKT5

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.88 94.0 At4g32500 829385 AKT5 member of Stelar K+ outward rectifying channel (SKOR) family S.X. H.G.
0.95 97.0 At3g49450 824107 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.94 96.7 At5g23480 832414 DNA binding F:DNA binding;P:histone modification, transcription initiation;C:nucleus;P S.X. H.G.
0.94 96.7 At4g39753 830132 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOAVF S.X. H.G.
0.93 96.4 At1g08600 837382 ATRX F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:unknown;C:unknown;MOBFPVA S.X. H.G.
0.93 96.4 At2g44190 819026 EDE1 (ENDOSPERM DEFECTIVE 1) Encodes a novel microtubule binding protein that preferentially associates with nuclear microtubules during mitosis and is essential during the mitotic and cytokinetic stages that generate the endosperm and embryo. S.X. H.G.
0.93 96.4 At5g49150 834974 GEX2 (GAMETE EXPRESSED 2) Encodes a transmembrane domain containing protein expressed in sperm cells. S.X. H.G.
0.93 96.4 At4g20500 827798 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.93 96.4 At3g60760 825247 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.93 96.4 At3g12060 820380 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PBM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
979.6 100.0 E-ATMX-35-raw-cel-1574334832
528.5 100.0 E-ATMX-35-raw-cel-1574334816
472.0 100.0 E-ATMX-35-raw-cel-1574334800
136.6 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
94.8 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
92.6 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
90.3 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
73.4 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
73.4 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
69.6 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.61 0 1160 At2g25600 817099 SPIK (Shaker Pollen Inward K+ channel) mutant has Impaired pollen-tube growth; member of Shaker K+ channel family, also Stelar K+ outward rectifying channel (SKOR) family C.G. S.X.
0.13 1e-13 79 At2g26650 817206 AKT1 (ARABIDOPSIS K TRANSPORTER 1) Shaker-like inward rectifying potassium channel predominantly expressed in predominantly in root hairs and root endodermis. C.G. S.X.
0.02 9e-5 50 At4g18290 827555 KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2) One of the four members of the Shaker family encoding guard cell potassium inward channels. Critical to stomatal opening induced by blue light. Critical to circadian rhythm of stomatal opening. Involved in plant development in response to high light intensity. Under high light intensity, the mutant plant produced less biomass compared to the wild type. C.G. S.X.
0.01 2e-2 42 At2g35710 818140 glycogenin glucosyltransferase (glycogenin)-related F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process, biosynthetic process;C:endomembrane system;PMFOBV C.G. S.X.
0.01 8e-2 40 At1g03910 839371 - F:unknown;P:unknown;C:unknown;MOFPBVA C.G. S.X.
0.01 3e-1 38 At4g23800 828480 high mobility group (HMG1/2) family protein F:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAV C.G. S.X.
0.01 3e-1 38 At3g23780 821960 NRPD2A This gene encodes the second largest, catalytic subunit of the nuclear DNA-dependent RNA polymerase IV (aka RNA polymerase D). The NRPD2 protein is found at nuclear foci that overlap or are adjacent to chromocentromeres but are not fully coincident with chromocentromeres. The loss of NRPD2 leads to the loss of cytosine methylation at pericentromeric 5S genes and AtSN1 retroelements but has no discernible effect on centromere repeat methylation. This suggests that Pol IV primarily affects facultative heterochromatin rather than constitutive heterochromatin. C.G. S.X.
0.01 3e-1 38 At3g18090 821334 NRPD2b Encodes a subunit of RNA polymerase IV (aka RNA polymerase D). NRPD2b is closely related to NRPD2a, but has lower levels of transcription and does not affect endogenous siRNA when mutated. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-3 44 Glycine max GmaAffx.88688.1.S1_at AF099095.1 - - 8e-27 At4g22200 AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3) C.G. S.X.
0.03 6e-1 36 Hordeum vulgare Y09748_at Y09748 potassium channel - 3e-11 At5g46240 KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1) C.G. S.X.
0.05 1e-5 54 Oryza sativa Os01g0648000 AK120308.1 - Potassium channel 3e-20 At2g26650 AKT1 (ARABIDOPSIS K TRANSPORTER 1) C.G. S.X.
0.19 4e-29 131 Populus trichocarpa PtpAffx.206406.1.S1_at pmrna12729 hypothetical protein - 1e-80 At2g26650 AKT1 (ARABIDOPSIS K TRANSPORTER 1) C.G. S.X.
0.03 3e-1 38 Triticum aestivum Ta.241.1.S1_at AF207745.1 AKT1-like potassium channel - 5e-10 At2g26650 AKT1 (ARABIDOPSIS K TRANSPORTER 1) C.G. S.X.
0.03 2e-3 44 Vitis vinifera 1619157_at AF359521.1 inward rectifying shaker-like K+ channel - 3e-66 At4g18290 KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2) C.G. S.X.
0.06 4e-11 69 Zea mays Zm.249.1.S1_at Y07632.1 potassium channel - 1e-16 At2g26650 AKT1 (ARABIDOPSIS K TRANSPORTER 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006811 The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
L GO:0006813 The directed movement of potassium ions (K+) into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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