CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g32460

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.22 17.5 At4g32460 829381 - F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB S.X. H.G.
0.57 73.8 At5g02260 831736 ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) S.X. H.G.
0.50 65.3 At2g34020 817963 calcium ion binding F:calcium ion binding;P:biological_process unknown;C:unknown;POMBF S.X. H.G.
0.50 65.3 At2g38530 818435 LTP2 (LIPID TRANSFER PROTEIN 2) Involved in lipid transfer between membranes. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region. Expressed in flower, leaves and siliques but absent in roots. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. S.X. H.G.
0.50 65.3 At5g22500 832311 FAR1 (FATTY ACID REDUCTASE 1) F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:chloroplast;MBFOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
39.0 99.8 GSM131590 ATGE_35_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
38.6 99.8 E-MEXP-1304-raw-cel-1530618235
37.8 99.8 E-MEXP-1304-raw-cel-1530618003
35.3 99.7 E-MEXP-1468-raw-cel-1591138721
35.3 99.7 E-MEXP-1304-raw-cel-1530618033
33.4 99.7 E-MEXP-1304-raw-cel-1530618171
32.8 99.7 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
32.7 99.7 E-MEXP-1304-raw-cel-1530618068
32.6 99.7 E-MEXP-1468-raw-cel-1591138688
32.1 99.7 E-MEXP-1304-raw-cel-1530618203
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.32 3e-27 123 At5g25460 832620 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB C.G. S.X.
0.34 2e-25 117 At5g11420 831013 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P C.G. S.X.
0.07 6e-4 46 At1g80240 844364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB C.G. S.X.
0.03 4e-2 40 At2g34510 818014 - F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PB C.G. S.X.
0.04 1e-1 38 At3g08030 819994 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cell wall;PB C.G. S.X.
0.01 5e-1 36 At4g18640 827598 MRH1 (morphogenesis of root hair 1) Required for root hair elongation during tip growth. C.G. S.X.
0.02 5e-1 36 At3g03990 819554 esterase/lipase/thioesterase family protein F:catalytic activity;P:unknown;C:unknown;BOPMFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-8 61 Glycine max Gma.12342.1.S1_s_at CD405864 - - 3e-6 At5g11420 - C.G. S.X.
0.03 1e+0 34 Hordeum vulgare Contig19526_at Contig19526 - - 7e-1 At4g32460 - C.G. S.X.
0.03 3e-1 38 Oryza sativa Os02g0176200 9630.m00753 - - 2e-1 At5g44450 methyltransferase C.G. S.X.
0.13 3e-6 54 Populus trichocarpa Ptp.5205.1.S1_at BU888886 hypothetical protein - 3e-9 At5g25460 unknown protein C.G. S.X.
0.03 6e-1 36 Triticum aestivum TaAffx.77975.1.S1_at CA739152 - - 8e+0 At5g56050 - C.G. S.X.
0.06 2e-10 65 Vitis vinifera 1619831_a_at BQ794924 hypothetical protein LOC100252479 - 6e-10 At4g32460 - C.G. S.X.
0.03 4e+0 32 Zea mays ZmAffx.1527.1.S1_at 40794996-123 - - 8e-1 At3g13710 PRA1.F4 (PRENYLATED RAB ACCEPTOR 1.F4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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