Gene omics information

Query gene ID At4g32460
Gene name -
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2217.5At4g32460829381-F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PBS.X.H.G.
0.5773.8At5g02260831736ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)S.X.H.G.
0.5065.3At2g34020817963calcium ion bindingF:calcium ion binding;P:biological_process unknown;C:unknown;POMBFS.X.H.G.
0.5065.3At2g38530818435LTP2 (LIPID TRANSFER PROTEIN 2)Involved in lipid transfer between membranes. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region. Expressed in flower, leaves and siliques but absent in roots. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.S.X.H.G.
0.5065.3At5g22500832311FAR1 (FATTY ACID REDUCTASE 1)F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:chloroplast;MBFOPS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
39.099.8GSM131590ATGE_35_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
32.899.7GSM131589ATGE_35_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.323e-27123At5g25460832620unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PBC.G.S.X.
0.342e-25117At5g11420831013-F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PC.G.S.X.
0.076e-446At1g80240844364unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PBC.G.S.X.
0.034e-240At2g34510818014-F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PBC.G.S.X.
0.041e-138At3g08030819994unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cell wall;PBC.G.S.X.
0.015e-136At4g18640827598MRH1 (morphogenesis of root hair 1)Required for root hair elongation during tip growth.C.G.S.X.
0.025e-136At3g03990819554esterase/lipase/thioesterase family proteinF:catalytic activity;P:unknown;C:unknown;BOPMFAC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.091e-861Glycine maxGma.12342.1.S1_s_atCD405864--3e-6At5g11420-C.G.S.X.
0.031e+034Hordeum vulgareContig19526_atContig19526--7e-1At4g32460-C.G.S.X.
0.033e-138Oryza sativaOs02g01762009630.m00753--2e-1At5g44450methyltransferaseC.G.S.X.
0.133e-654Populus trichocarpaPtp.5205.1.S1_atBU888886hypothetical protein-3e-9At5g25460unknown proteinC.G.S.X.
0.036e-136Triticum aestivumTaAffx.77975.1.S1_atCA739152--8e+0At5g56050-C.G.S.X.
0.062e-1065Vitis vinifera1619831_a_atBQ794924hypothetical protein LOC100252479-6e-10At4g32460-C.G.S.X.
0.034e+032Zea maysZmAffx.1527.1.S1_at40794996-123--8e-1At3g13710PRA1.F4 (PRENYLATED RAB ACCEPTOR 1.F4)C.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage