CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g32250

Gene name protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.22 17.5 At4g32250 829358 protein kinase family protein F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVA S.X. H.G.
0.67 81.6 At4g22920 828391 NYE1 (NON-YELLOWING 1) Similar to the tomato senescence-inducible chloroplast stay-green protein 1. It is upregulated during maximal senescence in the Arabidopsis life cycle, especially in senescent leaves. S.X. H.G.
0.44 57.2 At1g21410 838740 SKP2A AtSKP2;1 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes. S.X. H.G.
0.33 38.1 At1g72770 843609 HAB1 (HOMOLOGY TO ABI1) mutant has ABA hypersensitive inhibition of seed germination; Protein Phosphatase 2C S.X. H.G.
0.29 30.3 At3g44880 823622 ACD1 (ACCELERATED CELL DEATH 1) Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene. S.X. H.G.
0.13 5.8 At5g13800 831225 hydrolase, alpha/beta fold family protein F:hydrolase activity, pheophytinase activity;P:chlorophyll catabolic process;C:chloroplast;BOPMAF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
93.5 99.9 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
76.2 99.9 GSM131537 ATGE_25_A GSE5630 AtGenExpress: Developmental series (leaves)
73.8 99.9 GSM131539 ATGE_25_C GSE5630 AtGenExpress: Developmental series (leaves)
70.5 99.9 GSM131538 ATGE_25_B GSE5630 AtGenExpress: Developmental series (leaves)
65.3 99.8 GSM269827 C2 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
53.7 99.8 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
48.7 99.8 GSM131606 ATGE_42_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
48.6 99.8 GSM268245 dor-drought-1, biological rep 1 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
47.0 99.8 GSM131603 ATGE_41_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
46.5 99.8 GSM269819 C2 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 3e-22 107 At4g32230 829356 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e-1 38 At3g13160 820505 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:mitochondrion, membrane;POMFBA C.G. S.X.
0.01 9e-1 36 At5g17680 831634 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
0.01 9e-1 36 At5g44510 834478 TAO1 (TARGET OF AVRB OPERATION1) Encodes TAO1 (Target of AvrB Operation), a TIR-NB-LRR protein that contributes to disease resistance induced by the Pseudomonas syringae effector AvrB. C.G. S.X.
0.01 9e-1 36 At1g68750 843206 ATPPC4 Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. C.G. S.X.
0.01 9e-1 36 At1g19630 838550 CYP722A1 member of CYP722A C.G. S.X.
0.01 4e+0 34 At5g58820 835999 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Glycine max GmaAffx.80214.1.S1_at AW394888 - - 1e+0 At5g53710 unknown protein C.G. S.X.
0.01 2e+0 34 Hordeum vulgare HVSMEn0005A08f_at HVSMEn0005A08f - - 1e+0 At3g12480 NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11) C.G. S.X.
0.03 8e-6 54 Oryza sativa Os06g0639500 AK068750.1 - Protein kinase domain containing protein 5e-6 At4g32250 protein kinase family protein C.G. S.X.
0.10 6e-9 63 Populus trichocarpa PtpAffx.249.451.S1_at CA823664 hypothetical protein - 2e-9 At4g32250 protein kinase family protein C.G. S.X.
0.02 1e+0 36 Triticum aestivum TaAffx.86868.1.S1_at CA599592 - - 1e+1 At5g42200 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 7e-2 38 Vitis vinifera 1606768_at CF413626 hypothetical protein LOC100268161 - 6e-1 At5g67520 adenylylsulfate kinase, putative C.G. S.X.
0.02 6e+0 32 Zea mays ZmAffx.181.1.A1_at AI668330 - - 8e-1 At5g25640 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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