CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g31960

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.69 82.9 At4g31960 829326 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.76 87.4 At1g32390 840132 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.72 84.8 At1g65120 842819 ubiquitin carboxyl-terminal hydrolase-related F:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;OPMFBV S.X. H.G.
0.69 82.9 At5g37640 833742 UBQ9 polyubiquitin gene with 4 ubiquitin repeats. The first ubiquitin repeat has 16 amino acid replacements. S.X. H.G.
0.64 78.9 At2g43730 818975 lectin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.60 75.7 At1g50680 841490 AP2 domain-containing transcription factor, putative F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POV S.X. H.G.
0.60 75.7 At5g03980 830277 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;PBMO S.X. H.G.
0.59 74.7 At1g43600 840944 NLI interacting factor (NIF) family protein F:phosphoprotein phosphatase activity;P:biological_process unknown;C:nucleus;MOFPV S.X. H.G.
0.59 74.7 At2g24000 816934 scpl22 (serine carboxypeptidase-like 22) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB S.X. H.G.
0.58 73.8 At1g02540 839516 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFVBPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
432.8 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
431.8 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
422.0 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
308.8 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
305.5 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
289.0 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
244.7 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
233.8 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
214.7 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
214.3 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.08 4e-2 38 At1g54720 841913 early-responsive to dehydration protein-related / ERD protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e-1 36 At5g07940 830688 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPA C.G. S.X.
0.01 2e-1 36 At5g07970 830691 dentin sialophosphoprotein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPF C.G. S.X.
0.03 7e-1 34 At1g69810 843317 WRKY36 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.01 7e-1 34 At1g04580 839488 AAO4 (ARABIDOPSIS ALDEHYDE OXIDASE 4) Encodes aldehyde oxidase AAO4 preferentially expressed in developing seeds. C.G. S.X.
0.01 7e-1 34 At1g65200 842827 ubiquitin carboxyl-terminal hydrolase-related F:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;PMOFB C.G. S.X.
0.01 7e-1 34 At1g10900 837633 phosphatidylinositol-4-phosphate 5-kinase family protein F:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process;C:plasma membrane;OMBPF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Glycine max Gma.13458.1.A1_at CD398733 - - 1e+0 At4g31960 unknown protein C.G. S.X.
0.04 1e+0 32 Hordeum vulgare HVSMEm0001O16r2_at HVSMEm0001O16r2 - - 3e-1 At4g16165 Expressed protein C.G. S.X.
0.03 1e+0 34 Oryza sativa Os01g0300100 9629.m01898 - - 1e-4 At5g19730 pectinesterase family protein C.G. S.X.
0.06 9e-1 34 Populus trichocarpa PtpAffx.214983.1.S1_s_at pmrna28919 hypothetical protein - 3e-1 At4g31960 unknown protein C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.98141.1.A1_at BG607866 - - 1e+0 At4g34770 auxin-responsive family protein C.G. S.X.
0.04 8e-1 32 Vitis vinifera 1622843_s_at CF212102 - - 6e-2 At1g11785 unknown protein C.G. S.X.
0.04 5e+0 30 Zea mays ZmAffx.224.1.A1_at AI670233 - - 8e-1 At5g06770 KH domain-containing protein / zinc finger (CCCH type) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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