CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g31940

Gene name CYP82C4

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g31940 829324 CYP82C4 member of CYP82C S.X. H.G.
1.00 100.0 At4g19690 827713 IRT1 (iron-regulated transporter 1) Fe(II) transport protein (IRT1) S.X. H.G.
0.89 94.6 At1g74770 843816 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVB S.X. H.G.
0.80 89.8 At3g58810 825050 MTPA2 (METAL TOLERANCE PROTEIN A2) Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane. S.X. H.G.
0.75 86.9 At1g74760 - - - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
227.8 100.0 GSM142672 SF001_ATH1_A2-Fille-WT-+dex GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
184.5 100.0 E-MEXP-635-raw-cel-912819824
169.2 100.0 E-MEXP-635-raw-cel-912819840
156.9 99.9 GSM142673 SF001_ATH1_A3-Fille-ANGR4-12 GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
131.1 99.9 GSM265474 Arabidopsis, whole roots, -Fe, 72 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
127.8 99.9 GSM157327 Hammond_3-11_Potassium-starved-root_Rep2_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
117.1 99.9 GSM131382 AtGen_6-5622_Genotoxicstress-Roots-24.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
116.5 99.9 GSM157315 Hammond_3-5_Potassium-starved-root_Rep1_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
115.4 99.9 GSM184930 Arabidopsis, whole roots, 140 mM NaCl, 1 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
98.4 99.9 GSM184927 Arabidopsis, whole roots, 140 mM NaCl, 30 minutes, replicate 1 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.93 0 2204 At4g31970 829327 CYP82C2 member of CYP82C C.G. S.X.
0.92 0 1594 At4g31950 829325 CYP82C3 member of CYP82C C.G. S.X.
0.02 8e-4 46 At1g13110 837868 CYP71B7 member of CYP71B C.G. S.X.
0.02 3e-3 44 At3g26330 822237 CYP71B37 putative cytochrome P450 C.G. S.X.
0.02 1e-2 42 At4g22690 828365 CYP706A1 member of CYP706A C.G. S.X.
0.02 1e-2 42 At4g22710 828367 CYP706A2 member of CYP706A C.G. S.X.
0.01 5e-2 40 At5g10610 830926 CYP81K1 member of CYP81K C.G. S.X.
0.01 5e-2 40 At3g20100 821553 CYP705A19 member of CYP705A C.G. S.X.
0.02 5e-2 40 At2g05180 815066 CYP705A6 member of CYP705A C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Glycine max GmaAffx.80728.1.S1_at BE059811 - - 5e-2 At2g43018 CPuORF17 (Conserved peptide upstream open reading frame 17) C.G. S.X.
0.02 4e-1 36 Hordeum vulgare Contig13256_at Contig13256 - - 2e+0 At1g26210 unknown protein C.G. S.X.
0.01 2e+0 36 Oryza sativa Os05g0119200 AK067943.1 - Conserved hypothetical protein 3e-2 At4g36780 transcription regulator C.G. S.X.
0.15 2e-14 81 Populus trichocarpa PtpAffx.221147.1.S1_at pmrna37785 cytochrome P450 - 1e-14 At4g31940 CYP82C4 C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.108286.1.S1_at CA690043 - - 4e-1 At5g09980 PROPEP4 (Elicitor peptide 4 precursor) C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1610739_at CB001884 - - 9e-1 At4g31940 CYP82C4 C.G. S.X.
0.01 1e+0 34 Zea mays Zm.14283.4.S1_at BG841525 hypothetical protein LOC100192676 - 2e-6 At5g47570 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00347 Cytochrome P450

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00903 Limonene and pinene degradation
00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
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