CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g31830

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.74 86.1 At4g31830 829312 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.92 96.0 At5g01670 831701 aldose reductase, putative F:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPA S.X. H.G.
0.88 94.0 At4g10020 826593 AtHSD5 (hydroxysteroid dehydrogenase 5) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV S.X. H.G.
0.80 89.8 At3g56350 824802 superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative F:superoxide dismutase activity, metal ion binding;P:superoxide metabolic process, removal of superoxide radicals;C:mitochondrion, endomembrane system;BOFMPAV S.X. H.G.
0.78 88.6 At5g55240 835617 caleosin-related family protein / embryo-specific protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO S.X. H.G.
0.77 88.0 At2g19900 816509 ATNADP-ME1 (NADP-malic enzyme 1) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. S.X. H.G.
0.77 88.0 At4g09600 826545 GASA3 (GAST1 PROTEIN HOMOLOG 3) One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato. S.X. H.G.
0.76 87.4 At1g27990 839692 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.76 87.4 At2g33520 817917 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF S.X. H.G.
0.76 87.4 At3g50980 824262 XERO1 (DEHYDRIN XERO 1) F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
381.3 100.0 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
362.3 100.0 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
348.0 100.0 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
288.3 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
286.0 100.0 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
257.3 100.0 GSM10451 WT Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
250.8 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
220.6 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
215.9 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
203.2 100.0 GSM10454 WT Post-Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 6e-1 34 At5g63120 836432 ethylene-responsive DEAD box RNA helicase, putative (RH30) F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:unknown;BMOFPAV C.G. S.X.
0.03 6e-1 34 At4g01940 828196 NFU1 Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU2 and 3 than to NFU4 and 5. Targeted to the chloroplast. C.G. S.X.
0.02 6e-1 34 At1g68020 843130 ATTPS6 Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain and a trehalose phosphatase (TPP)-like domain. It can complement a yeast mutant lacking both of these activities suggesting that this is a bifunctional enzyme. C.G. S.X.
0.01 6e-1 34 At1g72250 843557 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVA C.G. S.X.
0.02 2e+0 32 At5g25250 832596 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPAV C.G. S.X.
0.02 2e+0 32 At5g25260 832597 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;BOMFPAV C.G. S.X.
0.02 2e+0 32 At3g08800 820027 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MPOBF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e+0 32 Glycine max PsAffx.psMA003xE05f_s_at PsAffx.psMA003xE05f - - 4e+0 At4g31830 unknown protein C.G. S.X.
0.04 3e-1 34 Hordeum vulgare Contig26575_at Contig26575 - - 1e+0 At4g31830 unknown protein C.G. S.X.
0.04 4e+0 32 Oryza sativa Os05g0202600 9633.m00993 - - 5e+0 At4g31830 unknown protein C.G. S.X.
0.05 3e+0 32 Populus trichocarpa PtpAffx.203076.1.S1_at pmrna6088 hypothetical protein - 2e+0 At4g31830 unknown protein C.G. S.X.
0.05 6e-1 34 Triticum aestivum Ta.5286.1.S1_at BJ280150 - - 3e+0 At3g20850 proline-rich family protein C.G. S.X.
0.04 3e+0 30 Vitis vinifera 1610055_at CB346192 - - 1e-3 At5g50740 metal ion binding C.G. S.X.
0.04 1e+0 32 Zea mays ZmAffx.111.1.A1_at AI665574 - - 3e+0 At5g57565 protein kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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