Gene omics information

Query gene ID At4g31790
Gene name diphthine synthase, putative (DPH5)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At4g31790829307diphthine synthase, putative (DPH5)F:methyltransferase activity, diphthine synthase activity;P:peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process;C:cellular_component unknown;AOMFBPS.X.H.G.
0.8491.9At1g31660840053-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBS.X.H.G.
0.6378.1At1g18850838466unknown proteinF:molecular_function unknown;P:biological_process unknown;C:nucleolus;PS.X.H.G.
0.6176.7At3g49990824161-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVAS.X.H.G.
0.6176.7At1g48920841314ATNUC-L1Encodes the predominant form of the two nucleolin proteins found in Arabidopsis. This protein is involved in rRNA processing, ribosome biosynthesis, and vascular pattern formation. PARL1 localizes to the nucleolus and parl1 mutants accumulate elevated levels of the unspliced 35S pre-rRNA. parl1 mutants also have defects in cotyledon, leaf, sepal, and petal vein patterning and have reduced stature, reduced fertility, increased bushiness, and reduced root length. The sugar-induced expression of ribosome proteins is also reduced in parl1 mutants.S.X.H.G.
0.5974.7At1g55900842040TIM50component of a translocase in the mitochondrial inner membraneS.X.H.G.
0.5469.5At5g60990836220DEAD/DEAH box helicase, putative (RH10)F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:unknown;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.5368.6At4g28450828962nucleotide binding / protein bindingThis gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligaseS.X.H.G.
0.4862.5At3g15080820738exonuclease family proteinF:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPBS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
15.299.4GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
12.799.3GSM134350St.Clair_1-11_333_Col-0_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1GSE5752Expression Level Polymorphism Project (ELP) - Col-0
11.099.2GSM134386St.Clair_1-47_334_Est_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1GSE5754Expression Level Polymorphism Project (ELP) - Est
9.899.1GSM134385St.Clair_1-46_293_Est_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5754Expression Level Polymorphism Project (ELP) - Est
8.699.0GSM133305RIKEN-NAKABAYASHI2AGSE5700AtGenExpress: Effect of ABA during seed imbibition
8.599.0GSM134387St.Clair_1-48_397_Est_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5754Expression Level Polymorphism Project (ELP) - Est
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-138At5g06110830498DNAJ heat shock N-terminal domain-containing protein / cell division protein-relatedF:heat shock protein binding, DNA binding;P:protein folding;C:unknown;MOBFPVAC.G.S.X.
0.014e-136At5g42580834265CYP705A12a member of the cytochrome P450 familyC.G.S.X.
0.014e-136At3g11450820318DNAJ heat shock N-terminal domain-containing protein / cell division protein-relatedF:heat shock protein binding, DNA binding;P:protein folding;C:cellular_component unknown;MOBFPVAC.G.S.X.
0.014e-136At3g48000823955ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4)Encodes a putative (NAD+) aldehyde dehydrogenase.C.G.S.X.
0.024e-136At2g24240816958potassium channel tetramerisation domain-containing proteinF:protein binding, voltage-gated potassium channel activity;P:potassium ion transport;C:voltage-gated potassium channel complex, membrane;MPOFC.G.S.X.
0.014e-136At1g28440839742HSL1 (HAESA-Like 1)F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVAC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.295e-26119Glycine maxGmaAffx.43307.1.S1_atBQ630096--4e-26At4g31790diphthine synthase, putative (DPH5)C.G.S.X.
0.161e-1169Hordeum vulgareContig12495_atContig12495--4e-11At4g31790diphthine synthase, putative (DPH5)C.G.S.X.
0.123e-344Oryza sativaOs03g0355800AK103902.1-Diphthine synthase (EC (Diphthamidebiosynthesis methyltransferase)3e-3At4g31790diphthine synthase, putative (DPH5)C.G.S.X.
0.069e-342Populus trichocarpaPtpAffx.20786.1.A1_atCA933335hypothetical protein-1e-2At4g31790diphthine synthase, putative (DPH5)C.G.S.X.
0.104e-136Triticum aestivumTa.14262.1.S1_atBQ842132--2e-1At4g31790diphthine synthase, putative (DPH5)C.G.S.X.
0.022e+032Vitis vinifera1610099_atBQ794282hypothetical protein LOC100250035-5e-6At5g50000protein kinase, putativeC.G.S.X.
0.137e-444Zea maysZm.12930.1.S1_atCA403471hypothetical protein LOC100191377-3e-3At4g31790diphthine synthase, putative (DPH5)C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
CGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
CGO:0017183The posttranslational modification of peptidyl-histidine to 2'-(3-carboxamido-3-(trimethylammonio)propyl)-L-histidine, known as diphthamide, found in translation elongation factor eEF-2.
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Metabolic pathways

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KaPPA-View IDLink to Kappa-ViewPathway Name

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