CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g31470

Gene name pathogenesis-related protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At4g31470 829274 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
0.67 81.6 At1g52660 841698 ATP binding F:ATP binding;P:defense response, apoptosis;C:unknown;PBOAM S.X. H.G.
0.67 81.6 At1g63450 842651 catalytic F:catalytic activity;P:unknown;C:membrane;POM S.X. H.G.
0.57 73.8 At5g15890 831446 unknown protein F:unknown;P:biological_process unknown;C:unknown;PMFOVBA S.X. H.G.
0.50 65.3 At3g21340 821688 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
302.4 100.0 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
160.4 99.9 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
142.9 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
141.5 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
141.5 99.9 GSM266672 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
139.5 99.9 GSM184836 Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 6 GSE7639 Expression analysis of root developmental zones after treatment with salt
139.0 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
138.2 99.9 GSM184843 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
126.9 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
125.8 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 4e-3 42 At4g25780 828683 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB C.G. S.X.
0.04 4e-3 42 At4g14270 827068 - Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins. C.G. S.X.
0.08 2e-2 40 At3g19690 821506 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB C.G. S.X.
0.03 7e-2 38 At3g47680 823922 DNA binding F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMOB C.G. S.X.
0.03 7e-2 38 At3g29075 822552 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA C.G. S.X.
0.03 3e-1 36 At5g45830 834623 DOG1 (DELAY OF GERMINATION 1) Encodes DOG1 (DELAY OF GERMINATION 1). A quantitative trait locus involved in the control of seed dormancy. Belongs to a novel plant-specific gene family whose members include: DOG1-like 1-4 (DOGL1-4, At4g18660, At4g18680, At4g18690, At4g18650 respectively) and DOG1. DOG1 expression is seed-specific. C.G. S.X.
0.02 1e+0 34 At5g60820 836203 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-2 40 Glycine max HgAffx.18452.1.S1_at CA940728 - - 1e-2 At4g31470 pathogenesis-related protein, putative C.G. S.X.
0.05 1e-1 36 Hordeum vulgare Contig2214_s_at Contig2214 - - 8e-2 At4g33730 pathogenesis-related protein, putative C.G. S.X.
0.06 1e-1 38 Oryza sativa Os02g0472500 9630.m02589 - - 8e-2 At4g31470 pathogenesis-related protein, putative C.G. S.X.
0.05 6e-3 42 Populus trichocarpa Ptp.5070.1.S1_s_at CK094766 hypothetical protein - 4e-1 At2g14580 ATPRB1 C.G. S.X.
0.04 1e+0 34 Triticum aestivum Ta.19101.1.S1_at CA647221 - - 1e-3 At4g25790 allergen V5/Tpx-1-related family protein C.G. S.X.
0.03 2e-2 38 Vitis vinifera 1615727_at CF205417.1 hypothetical protein LOC100261981 - 9e-2 At4g31470 pathogenesis-related protein, putative C.G. S.X.
0.05 5e-4 44 Zea mays Zm.17696.1.A1_at BM073027 - - 2e-3 At4g31470 pathogenesis-related protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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