CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g30860

Gene name SDG4 (SET DOMAIN GROUP 4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.87 93.5 At4g30860 829210 SDG4 (SET DOMAIN GROUP 4) Encodes a member of the trxG protein family. Contains a SET domain which is known to be involved in modification of histone tails by methylation. Interacts physically with AMS, but the implications of this interaction are unknown.Overexpression results in plieotrophic developmental defects. S.X. H.G.
0.96 97.3 At3g49450 824107 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.95 97.0 At5g23480 832414 DNA binding F:DNA binding;P:histone modification, transcription initiation;C:nucleus;P S.X. H.G.
0.94 96.7 At1g08600 837382 ATRX F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:unknown;C:unknown;MOBFPVA S.X. H.G.
0.94 96.7 At4g20500 827798 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.94 96.7 At3g60760 825247 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.94 96.7 At3g12060 820380 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PBM S.X. H.G.
0.94 96.7 At1g52920 841725 GPCR (G PROTEIN COUPLED RECEPTOR) Encodes a plasma membrane�localized ABA receptor, which interacts with the Gαβγ complex. It has been postulated that the binding of ABA to GCR2 results in the release of the G protein and dissociation of the heterotrimeric complex into Gα and the Gβγ dimer to activate downstream ABA effectors and to trigger the ABA responses. S.X. H.G.
0.94 96.7 At2g17090 816214 SSP (SHORT SUSPENSOR) F:protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBVF S.X. H.G.
0.93 96.4 At2g22600 816791 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1571.1 100.0 E-ATMX-35-raw-cel-1574334800
1420.0 100.0 E-ATMX-35-raw-cel-1574334816
1205.8 100.0 E-ATMX-35-raw-cel-1574334832
66.7 99.8 E-ATMX-35-raw-cel-1574334880
30.6 99.7 E-MEXP-285-raw-cel-440782725
28.5 99.7 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
28.1 99.7 E-MEXP-285-raw-cel-440782791
25.9 99.7 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
18.4 99.5 E-MEXP-1138-raw-cel-1432772650
17.5 99.5 GSM154507 Arabidopsis growing pollen tubes rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-1 38 At4g12640 826877 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFPOBA C.G. S.X.
0.01 2e-1 38 At2g46520 819263 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative F:protein transporter activity, importin-alpha export receptor activity, binding;P:intracellular protein transport, cell proliferation, protein import into nucleus, docking;C:nucleus, nuclear pore, membrane, cytoplasm;MFOP C.G. S.X.
0.03 7e-1 36 At4g25030 828606 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBF C.G. S.X.
0.01 7e-1 36 At3g61415 825314 ASK21 (ARABIDOPSIS SKP1-LIKE 21) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFVB C.G. S.X.
0.01 7e-1 36 At2g39380 818523 ATEXO70H2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. C.G. S.X.
0.02 3e+0 34 At5g23600 832426 tRNA 2'phosphotransferase, putative F:tRNA 2'-phosphotransferase activity, transferase activity, transferring phosphorus-containing groups;P:tRNA splicing, via endonucleolytic cleavage and ligation;C:unknown;BFOMAPV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e+0 34 Glycine max GmaAffx.82539.1.S1_at BF010232 - - 2e-7 At2g01850 EXGT-A3 C.G. S.X.
0.04 4e-1 36 Hordeum vulgare Contig16971_at Contig16971 - - 3e-1 At4g30860 SDG4 (SET DOMAIN GROUP 4) C.G. S.X.
0.08 6e-3 44 Oryza sativa Os02g0611300 AK067083.1 - Nuclear protein SET domain containing protein 5e-3 At4g30860 SDG4 (SET DOMAIN GROUP 4) C.G. S.X.
0.37 2e-23 111 Populus trichocarpa PtpAffx.214441.1.S1_at pmrna28085 SET domain protein - 1e-23 At4g30860 SDG4 (SET DOMAIN GROUP 4) C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.29184.1.S1_s_at CA648571 - - 5e-1 At4g15393 CYP702A5 C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1615957_at BQ798110 hypothetical protein LOC100246271 - 9e-39 At5g20570 RBX1 (RING-BOX 1) C.G. S.X.
0.02 1e+0 34 Zea mays Zm.4128.2.S1_at AY111106.1 SET domain protein 110 - 2e+0 At4g30860 SDG4 (SET DOMAIN GROUP 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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