Gene omics information

Query gene ID At4g30860
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8793.5At4g30860829210SDG4 (SET DOMAIN GROUP 4)Encodes a member of the trxG protein family. Contains a SET domain which is known to be involved in modification of histone tails by methylation. Interacts physically with AMS, but the implications of this interaction are unknown.Overexpression results in plieotrophic developmental defects.S.X.H.G.
0.9697.3At3g49450824107F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9597.0At5g23480832414DNA bindingF:DNA binding;P:histone modification, transcription initiation;C:nucleus;PS.X.H.G.
0.9496.7At1g08600837382ATRXF:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:unknown;C:unknown;MOBFPVAS.X.H.G.
0.9496.7At4g20500827798transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.9496.7At3g60760825247unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9496.7At3g12060820380unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PBMS.X.H.G.
0.9496.7At1g52920841725GPCR (G PROTEIN COUPLED RECEPTOR)Encodes a plasma membrane–localized ABA receptor, which interacts with the Gαβγ complex. It has been postulated that the binding of ABA to GCR2 results in the release of the G protein and dissociation of the heterotrimeric complex into Gα and the Gβγ dimer to activate downstream ABA effectors and to trigger the ABA responses.S.X.H.G.
0.9496.7At2g17090816214SSP (SHORT SUSPENSOR)F:protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBVFS.X.H.G.
0.9396.4At2g22600816791KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
28.599.7GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
25.999.7GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
17.599.5GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.022e-138At4g12640826877RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFPOBAC.G.S.X.
0.012e-138At2g46520819263cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putativeF:protein transporter activity, importin-alpha export receptor activity, binding;P:intracellular protein transport, cell proliferation, protein import into nucleus, docking;C:nucleus, nuclear pore, membrane, cytoplasm;MFOPC.G.S.X.
0.037e-136At4g25030828606unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFC.G.S.X.
0.017e-136At3g61415825314ASK21 (ARABIDOPSIS SKP1-LIKE 21)F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFVBC.G.S.X.
0.017e-136At2g39380818523ATEXO70H2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H2)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.C.G.S.X.
0.023e+034At5g23600832426tRNA 2'phosphotransferase, putativeF:tRNA 2'-phosphotransferase activity, transferase activity, transferring phosphorus-containing groups;P:tRNA splicing, via endonucleolytic cleavage and ligation;C:unknown;BFOMAPVC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.024e+034Glycine maxGmaAffx.82539.1.S1_atBF010232--2e-7At2g01850EXGT-A3C.G.S.X.
0.044e-136Hordeum vulgareContig16971_atContig16971--3e-1At4g30860SDG4 (SET DOMAIN GROUP 4)C.G.S.X.
0.086e-344Oryza sativaOs02g0611300AK067083.1-Nuclear protein SET domain containing protein5e-3At4g30860SDG4 (SET DOMAIN GROUP 4)C.G.S.X.
0.372e-23111Populus trichocarpaPtpAffx.214441.1.S1_atpmrna28085SET domain protein-1e-23At4g30860SDG4 (SET DOMAIN GROUP 4)C.G.S.X.
0.023e+034Triticum aestivumTaAffx.29184.1.S1_s_atCA648571--5e-1At4g15393CYP702A5C.G.S.X.
0.029e-134Vitis vinifera1615957_atBQ798110hypothetical protein LOC100246271-9e-39At5g20570RBX1 (RING-BOX 1)C.G.S.X.
0.021e+034Zea maysZm.4128.2.S1_atAY111106.1SET domain protein 110-2e+0At4g30860SDG4 (SET DOMAIN GROUP 4)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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