Gene omics information

Query gene ID At4g30825
Gene name pentatricopeptide (PPR) repeat-containing protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g30825829206pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:cell cycle;C:nucleus;POMFBAS.X.H.G.
0.5469.5At5g55740835668CRR21 (chlororespiratory reduction 21)Encodes a member of the E+ subgroup of the PPR protein family, containing the E and E+ motifs following a tandem array of PPR motifs. It also contains an unknown motif consisting of 15 aa, which is highly conserved in some PPR proteins, including CRR4. CRR21 is involved in RNA editing of the site 2 of ndhD (ndhD-2),which encodes a subunit of the NDH complex. The RNA editing changes aa 128 from Ser to Leu. Mutants have impaired NDH complex activity.S.X.H.G.
0.5166.3At3g18390821368EMB1865 (embryo defective 1865)F:RNA binding;P:embryonic development ending in seed dormancy;C:chloroplast;OPMFVBAS.X.H.G.
0.4457.2At3g09210820077PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13)F:transcription elongation regulator activity;P:positive regulation of RNA elongation from RNA polymerase II promoter;C:plastid chromosome, nucleoid;BOPFS.X.H.G.
0.4050.8At1g70200843356RNA recognition motif (RRM)-containing proteinF:nucleic acid binding;P:unknown;C:chloroplast;MOFBPVAS.X.H.G.
0.4050.8At4g31850829314PGR3 (PROTON GRADIENT REGULATION 3)encodes a protein containing 27 pentatrico-peptide repeat (PPR) motifsS.X.H.G.
0.3643.6At3g04760819636pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAS.X.H.G.
0.3439.8At1g48520841273GATB (GLU-ADT SUBUNIT B)Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836).S.X.H.G.
0.3338.1At5g52520835328OVA6 (OVULE ABORTION 6)F:proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:regulation of photosynthesis, seed development, embryo sac development, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, chloroplast stroma;BOAMFPS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
63.199.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
50.399.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
37.899.8GSM157388Sakakibara_1-7_DMSO-treatment-wild_Rep1_ATH1GSE6832Cytokinin treatment on aerial parts of seedlings
34.099.7GSM157390Sakakibara_1-9_DMSO-treatment-wild_Rep3_ATH1GSE6832Cytokinin treatment on aerial parts of seedlings
28.699.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.999.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
21.699.6GSM157389Sakakibara_1-8_DMSO-treatment-wild_Rep2_ATH1GSE6832Cytokinin treatment on aerial parts of seedlings
21.499.6GSM157391Sakakibara_1-10_DMSO-treatment-mutant_Rep1_ATH1GSE6832Cytokinin treatment on aerial parts of seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-346At4g14230827064CBS domain-containing protein-relatedF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;BOMFPAC.G.S.X.
0.013e-138At4g14480827095protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVAC.G.S.X.
0.011e+036At4g09430826526disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:chloroplast;PMBOFAVC.G.S.X.
0.011e+036At3g47840823940pentatricopeptide (PPR) repeat-containing proteinF:binding;P:biological_process unknown;C:unknown;POMFBC.G.S.X.
0.011e+036At3g29185822570unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPC.G.S.X.
0.011e+036At1g78800844216glycosyl transferase family 1 proteinF:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;BOAPMFC.G.S.X.
0.011e+036At1g63210842626RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulatorF:transcription elongation regulator activity, protein binding, hydrolase activity, acting on ester bonds, RNA binding;P:regulation of transcription from RNA polymerase II promoter, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:unknown;BMOFPAC.G.S.X.
0.011e+036At1g42440840848-F:molecular_function unknown;P:ribosome biogenesis;C:nucleus;MOFBPVC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.104e-20101Glycine maxGmaAffx.80960.1.S1_atBG789979--1e-20At4g30825pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.017e-136Hordeum vulgareContig18318_atContig18318--2e+0At4g23432unknown proteinC.G.S.X.
0.031e-554Oryza sativaOs09g0423300AK099808.1-PPR repeat containing protein7e-6At4g30825pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.212e-28129Populus trichocarpaPtpAffx.205939.1.S1_atpmrna11783hypothetical protein-9e-29At4g30825pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.014e-138Triticum aestivumTaAffx.8962.1.S1_atCA617340--3e+0At5g48595-C.G.S.X.
0.014e-136Vitis vinifera1615650_atCB976310hypothetical protein LOC100267946-3e-2At1g12740CYP87A2C.G.S.X.
0.011e-138Zea maysZm.17055.1.S1_atCF972499--2e-2At1g12665-C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0007049The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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