CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g30825

Gene name pentatricopeptide (PPR) repeat-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g30825 829206 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:cell cycle;C:nucleus;POMFBA S.X. H.G.
0.54 69.5 At5g55740 835668 CRR21 (chlororespiratory reduction 21) Encodes a member of the E+ subgroup of the PPR protein family, containing the E and E+ motifs following a tandem array of PPR motifs. It also contains an unknown motif consisting of 15 aa, which is highly conserved in some PPR proteins, including CRR4. CRR21 is involved in RNA editing of the site 2 of ndhD (ndhD-2),which encodes a subunit of the NDH complex. The RNA editing changes aa 128 from Ser to Leu. Mutants have impaired NDH complex activity. S.X. H.G.
0.51 66.3 At3g18390 821368 EMB1865 (embryo defective 1865) F:RNA binding;P:embryonic development ending in seed dormancy;C:chloroplast;OPMFVBA S.X. H.G.
0.46 59.8 At3g49140 824075 - F:unknown;P:unknown;C:unknown;PBMOFVA S.X. H.G.
0.44 57.2 At3g09210 820077 PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) F:transcription elongation regulator activity;P:positive regulation of RNA elongation from RNA polymerase II promoter;C:plastid chromosome, nucleoid;BOPF S.X. H.G.
0.40 50.8 At1g70200 843356 RNA recognition motif (RRM)-containing protein F:nucleic acid binding;P:unknown;C:chloroplast;MOFBPVA S.X. H.G.
0.40 50.8 At4g31850 829314 PGR3 (PROTON GRADIENT REGULATION 3) encodes a protein containing 27 pentatrico-peptide repeat (PPR) motifs S.X. H.G.
0.36 43.6 At3g04760 819636 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA S.X. H.G.
0.34 39.8 At1g48520 841273 GATB (GLU-ADT SUBUNIT B) Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836). S.X. H.G.
0.33 38.1 At5g52520 835328 OVA6 (OVULE ABORTION 6) F:proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:regulation of photosynthesis, seed development, embryo sac development, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, chloroplast stroma;BOAMFP S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
63.1 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
50.3 99.8 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
37.8 99.8 GSM157388 Sakakibara_1-7_DMSO-treatment-wild_Rep1_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
34.0 99.7 GSM157390 Sakakibara_1-9_DMSO-treatment-wild_Rep3_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
28.6 99.7 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
24.1 99.6 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
24.0 99.6 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
22.9 99.6 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
21.6 99.6 GSM157389 Sakakibara_1-8_DMSO-treatment-wild_Rep2_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
21.4 99.6 GSM157391 Sakakibara_1-10_DMSO-treatment-mutant_Rep1_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-3 46 At4g14230 827064 CBS domain-containing protein-related F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;BOMFPA C.G. S.X.
0.01 3e-1 38 At4g14480 827095 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA C.G. S.X.
0.01 1e+0 36 At4g09430 826526 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:chloroplast;PMBOFAV C.G. S.X.
0.01 1e+0 36 At3g47840 823940 pentatricopeptide (PPR) repeat-containing protein F:binding;P:biological_process unknown;C:unknown;POMFB C.G. S.X.
0.01 1e+0 36 At3g29185 822570 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BP C.G. S.X.
0.01 1e+0 36 At1g78800 844216 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;BOAPMF C.G. S.X.
0.01 1e+0 36 At1g63210 842626 RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulator F:transcription elongation regulator activity, protein binding, hydrolase activity, acting on ester bonds, RNA binding;P:regulation of transcription from RNA polymerase II promoter, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:unknown;BMOFPA C.G. S.X.
0.01 1e+0 36 At1g42440 840848 - F:molecular_function unknown;P:ribosome biogenesis;C:nucleus;MOFBPV C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 4e-20 101 Glycine max GmaAffx.80960.1.S1_at BG789979 - - 1e-20 At4g30825 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 7e-1 36 Hordeum vulgare Contig18318_at Contig18318 - - 2e+0 At4g23432 unknown protein C.G. S.X.
0.03 1e-5 54 Oryza sativa Os09g0423300 AK099808.1 - PPR repeat containing protein 7e-6 At4g30825 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.21 2e-28 129 Populus trichocarpa PtpAffx.205939.1.S1_at pmrna11783 hypothetical protein - 9e-29 At4g30825 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 4e-1 38 Triticum aestivum TaAffx.8962.1.S1_at CA617340 - - 3e+0 At5g48595 - C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1615650_at CB976310 hypothetical protein LOC100267946 - 3e-2 At1g12740 CYP87A2 C.G. S.X.
0.01 1e-1 38 Zea mays Zm.17055.1.S1_at CF972499 - - 2e-2 At1g12665 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0007049 The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage