CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g30720

Gene name electron carrier/ oxidoreductase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g30720 829195 electron carrier/ oxidoreductase F:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPF S.X. H.G.
0.60 75.7 At5g55580 835652 mitochondrial transcription termination factor family protein / mTERF family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFVB S.X. H.G.
0.51 66.3 At3g13180 820508 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein F:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFAP S.X. H.G.
0.51 66.3 At4g09730 826559 DEAD/DEAH box helicase, putative F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:chloroplast;BOMFPAV S.X. H.G.
0.46 59.8 At3g63510 825526 FAD binding / catalytic/ tRNA dihydrouridine synthase F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process;C:unknown;BOMFPA S.X. H.G.
0.45 58.3 At3g27180 822337 unknown protein F:unknown;P:unknown;C:chloroplast;BOMPAF S.X. H.G.
0.44 57.2 At4g20130 827759 PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14) F:unknown;P:unknown;C:plastid chromosome, chloroplast, nucleoid;PFMO S.X. H.G.
0.43 55.3 At3g04650 819623 oxidoreductase F:oxidoreductase activity;P:unknown;C:chloroplast;OBPAMF S.X. H.G.
0.42 53.9 At3g59040 825073 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBA S.X. H.G.
0.41 52.4 At5g64580 836579 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, metalloendopeptidase activity, nucleotide binding, zinc ion binding, ATP binding;P:unknown;C:chloroplast, chloroplast envelope;BOMFPAV S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
52.6 99.8 GSM183514 MYB29_OE_rep2 GSE7570 ATR1_like_Clade_OE_and_miR
40.4 99.8 GSM317619 Apex_14DAS_1 GSE12676 Arabidopsis thaliana Ler developmental series
37.9 99.8 GSM183511 MYB76_OE_rep1 GSE7570 ATR1_like_Clade_OE_and_miR
35.0 99.7 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
34.3 99.7 GSM183512 MYB76_OE_rep2 GSE7570 ATR1_like_Clade_OE_and_miR
30.6 99.7 GSM183513 MYB29_OE_rep1 GSE7570 ATR1_like_Clade_OE_and_miR
29.4 99.7 GSM318331 EL_14DAS_2 GSE12676 Arabidopsis thaliana Ler developmental series
28.7 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
27.4 99.7 GSM184152 35S:ATR1_like_miR_rep2 GSE7570 ATR1_like_Clade_OE_and_miR
26.4 99.7 GSM133120 RIKEN-YAMAUCHI2B GSE5687 AtGenExpress: Different temperature treatment of seeds
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 3e-1 38 At5g22140 832275 pyridine nucleotide-disulphide oxidoreductase family protein F:electron carrier activity, oxidoreductase activity, FAD binding;P:unknown;C:plasma membrane;BOFAMP C.G. S.X.
0.01 3e-1 38 At4g31950 829325 CYP82C3 member of CYP82C C.G. S.X.
0.01 3e-1 38 At3g57060 824873 binding F:binding;P:mitosis, chromosome condensation;C:nucleus, condensin complex;MOFBPVA C.G. S.X.
0.01 3e-1 38 At3g21230 821677 4CL5 (4-coumarate:CoA ligase 5) The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo. C.G. S.X.
0.01 1e+0 36 At3g27640 822386 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPA C.G. S.X.
0.01 1e+0 36 At2g37195 818296 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 1e+0 36 At1g11690 837713 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 3e-5 52 Glycine max Gma.6946.1.S1_at BU081871 - - 8e-6 At4g30720 electron carrier/ oxidoreductase C.G. S.X.
0.01 1e-1 38 Hordeum vulgare Contig24870_at Contig24870 - - 1e+0 At4g29980 unknown protein C.G. S.X.
0.12 3e-18 95 Oryza sativa Os05g0411200 AK065380.1 - Adrenodoxin reductase family protein 2e-18 At4g30720 electron carrier/ oxidoreductase C.G. S.X.
0.41 4e-50 200 Populus trichocarpa PtpAffx.214454.1.S1_at pmrna28103 hypothetical protein - 3e-50 At4g30720 electron carrier/ oxidoreductase C.G. S.X.
0.03 3e-4 48 Triticum aestivum Ta.1492.1.A1_at BE430437 - - 6e-5 At4g30720 electron carrier/ oxidoreductase C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1608564_at BQ794173 hypothetical protein LOC100250341 - 3e-1 At2g38500 - C.G. S.X.
0.04 2e-6 54 Zea mays Zm.5959.1.A1_at AI665952 - - 1e-6 At4g30720 electron carrier/ oxidoreductase C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage