Gene omics information

Query gene ID At4g30650
Gene name hydrophobic protein, putative / low temperature and salt responsive protein, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4457.2At4g30650829188hydrophobic protein, putative / low temperature and salt responsive protein, putativeF:unknown;P:response to salt stress, hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMOS.X.H.G.
1.00100.0At2g42540818854COR15A (COLD-REGULATED 15A)A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.S.X.H.G.
0.8089.8At2g42530818853COR15B (COLD REGULATED 15B)F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMFS.X.H.G.
0.6781.6At5g15960831453KIN1cold and ABA inducible protein kin1, possibly functions as an anti-freeze protein. Transcript level of this gene is induced by cold, ABA, dehydration and osmoticum (mannitol). However, protein activity of GUS fused to the promoter of this gene is inhibited by cold treatment, suggesting an inhibition of the protein by increased transcript level.S.X.H.G.
0.5065.3At1g29395839815COR414-TM1encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
25.999.7GSM173442wild-type Arabidopsis, biological rep1GSE7211A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
25.199.6GSM173444wild-type Arabidopsis, biological rep3GSE7211A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
19.399.6GSM173446oxt6 mutant, biological rep2GSE7211A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
18.599.5GSM265861short 12BGSE10522Expression data of Arabidopsis thaliana rosettes during chilling
16.799.5GSM265859short 17BGSE10522Expression data of Arabidopsis thaliana rosettes during chilling
16.699.5GSM265863short 8BGSE10522Expression data of Arabidopsis thaliana rosettes during chilling
16.099.5GSM173447oxt6 mutant, biological rep3GSE7211A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
15.499.5GSM173445oxt6 mutant, biological rep1GSE7211A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
15.299.4GSM265862short 10BGSE10522Expression data of Arabidopsis thaliana rosettes during chilling
15.099.4GSM173443wild-type Arabidopsis, biological rep2GSE7211A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.588e-1579At4g30660829189hydrophobic protein, putative / low temperature and salt responsive protein, putativeF:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMOC.G.S.X.
0.328e-1579At2g24040816938hydrophobic protein, putative / low temperature and salt responsive protein, putativeF:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;PFBMOC.G.S.X.
0.014e-134At1g07110837221F2KP (FRUCTOSE-2,6-BISPHOSPHATASE)Encodes the bifunctional enzyme fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase.C.G.S.X.
0.022e+032At5g17160831580unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVAC.G.S.X.
0.012e+032At4g31110829238kinaseF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAC.G.S.X.
0.022e+032At3g59660825135C2 domain-containing protein / GRAM domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOC.G.S.X.
0.012e+032At2g13680815852CALS5 (CALLOSE SYNTHASE 5)Responsible for the synthesis of callose deposited at the primary cell wall of meiocytes, tetrads and microspores. Required for exine formation during microgametogenesis and for pollen viability. Highest expression in meiocytes, tetrads, microspores and mature pollen.C.G.S.X.
0.022e+032At1g30710839951FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAC.G.S.X.
0.026e+030At5g50650835135WD-40 repeat family protein / St12p protein, putativeF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;BMFOPAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.061e-136Glycine maxGma.1680.1.S1_x_atAW132176--5e-6At3g05890RCI2B (RARE-COLD-INDUCIBLE 2B)C.G.S.X.
0.043e+030Hordeum vulgareHVSMEg0003J21r2_atHVSMEg0003J21r2--1e+0At3g60020ASK5 (ARABIDOPSIS SKP1-LIKE 5)C.G.S.X.
0.061e+130Oryza sativaOsAffx.5573.1.S1_at---0C.G.S.X.
0.052e+032Populus trichocarpaPtpAffx.206791.1.S1_atpmrna13479hypothetical protein-1e-5At1g15370-C.G.S.X.
0.047e+030Triticum aestivumTaAffx.59413.1.S1_atCA600795--5e-2At3g50800unknown proteinC.G.S.X.
0.085e-132Vitis vinifera1620163_x_atCK138257.1hypothetical protein LOC100247965-6e-4At2g38905hydrophobic protein, putative / low temperature and salt responsive protein, putativeC.G.S.X.
0.053e+030Zea maysZm.5636.1.A1_atCO523124hypothetical protein LOC100279744-3e+0At5g59500unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0050832Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
CGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
CGO:0042538A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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