CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g30560

Gene name ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.72 84.8 At4g30560 829179 ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9) member of Cyclic nucleotide gated channel family S.X. H.G.
0.97 97.6 At3g49450 824107 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.96 97.3 At2g44190 819026 EDE1 (ENDOSPERM DEFECTIVE 1) Encodes a novel microtubule binding protein that preferentially associates with nuclear microtubules during mitosis and is essential during the mitotic and cytokinetic stages that generate the endosperm and embryo. S.X. H.G.
0.95 97.0 At4g20500 827798 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.95 97.0 At1g08600 837382 ATRX F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:unknown;C:unknown;MOBFPVA S.X. H.G.
0.94 96.7 At4g08590 826420 ORTHL (ORTHRUS-LIKE) F:ubiquitin-protein ligase activity, zinc ion binding;P:protein ubiquitination;C:cytoplasm;MPOFBV S.X. H.G.
0.94 96.7 At5g58190 835931 ECT10 F:unknown;P:unknown;C:unknown;MPFO S.X. H.G.
0.94 96.7 At2g17090 816214 SSP (SHORT SUSPENSOR) F:protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBVF S.X. H.G.
0.93 96.4 At3g01015 821318 - F:unknown;P:unknown;C:unknown;PMOF S.X. H.G.
0.93 96.4 At4g35560 829708 - F:molecular_function unknown;P:unknown;C:CUL4 RING ubiquitin ligase complex;MOFPB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
648.5 100.0 E-ATMX-35-raw-cel-1574334800
614.7 100.0 E-ATMX-35-raw-cel-1574334816
485.6 100.0 E-ATMX-35-raw-cel-1574334832
69.5 99.9 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
61.4 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
59.0 99.8 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
55.4 99.8 E-MEXP-1474-raw-cel-1593932673
55.3 99.8 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
51.9 99.8 E-MEXP-1474-raw-cel-1593932577
49.7 99.8 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.72 0 922 At2g23980 816931 ATCNGC6 member of Cyclic nucleotide gated channel family C.G. S.X.
0.45 3e-106 387 At5g57940 835905 ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5) member of Cyclic nucleotide gated channel family C.G. S.X.
0.39 1e-86 321 At1g19780 838566 ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8) member of Cyclic nucleotide gated channel family C.G. S.X.
0.34 1e-49 198 At1g15990 838169 ATCNGC7 (CYCLIC NUCLEOTIDE GATED CHANNEL 7) member of Cyclic nucleotide gated channel family C.G. S.X.
0.06 2e-14 81 At4g30360 829159 ATCNGC17 member of Cyclic nucleotide gated channel family C.G. S.X.
0.08 1e-6 56 At2g28260 817372 ATCNGC15 member of Cyclic nucleotide gated channel family C.G. S.X.
0.05 7e-5 50 At5g53130 835393 CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1) member of Cyclic nucleotide gated channel family C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 3e-45 184 Glycine max Gma.1806.1.S1_at BI971557 - - 5e-26 At2g23980 ATCNGC6 C.G. S.X.
0.03 1e-1 38 Hordeum vulgare Contig14052_at Contig14052 - - 4e-10 At5g53130 CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1) C.G. S.X.
0.07 9e-6 54 Oryza sativa Os04g0643600 AK105170.1 - Cyclic nucleotide-gated channel C (Fragment) 9e-9 At5g57940 ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5) C.G. S.X.
0.39 2e-132 474 Populus trichocarpa PtpAffx.5963.1.S1_s_at CV243600 hypothetical protein - 7e-112 At2g23980 ATCNGC6 C.G. S.X.
0.02 7e-2 40 Triticum aestivum Ta.8023.1.S1_at CA640979 - - 4e-3 At4g30360 ATCNGC17 C.G. S.X.
0.02 2e-2 40 Vitis vinifera 1620337_at CF213940 similar to ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5); calmodulin binding / cyclic nucleotide binding / potassium channel - 2e-5 At5g62500 ATEB1B (END BINDING PROTEIN 1B) C.G. S.X.
0.01 2e+0 34 Zea mays Zm.4493.2.A1_at CD437885 - - 2e+0 At1g28140 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006811 The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
L GO:0006813 The directed movement of potassium ions (K+) into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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