CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g30470

Gene name cinnamoyl-CoA reductase-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g30470 829170 cinnamoyl-CoA reductase-related F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFMA S.X. H.G.
0.18 11.4 At4g17530 827468 ATRAB1C F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, vacuole, membrane;MOFPBVA S.X. H.G.
0.18 11.4 At5g47200 834766 ATRAB1A F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA S.X. H.G.
0.10 3.4 At1g63010 842604 SPX (SYG1/Pho81/XPR1) domain-containing protein F:unknown;P:unknown;C:vacuolar membrane, plant-type vacuole;BFOPMA S.X. H.G.
0.08 2.3 At1g75170 843854 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein F:transporter activity;P:transport;C:unknown;MFPO S.X. H.G.
0.07 1.9 At3g54200 824587 - F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane;P S.X. H.G.
0.05 1.1 At1g36160 840521 ACC1 (ACETYL-COENZYME A CARBOXYLASE 1) Encodes acetyl-CoA carboxylase. Mutant displays uncoordinated cell divisions which are enhanced by cytokinins. Mutant also has aberrant organization of the apical region in the embryo and abnormal root and shoot development. Essential for very long chain fatty acid elongation. S.X. H.G.
0.04 0.9 At1g67730 843098 YBR159 Encodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene. S.X. H.G.
0.01 0.2 At1g03590 839447 catalytic/ protein serine/threonine phosphatase F:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:plasma membrane;PMOFV S.X. H.G.
0.01 0.2 At1g78610 844197 MSL6 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 6) F:unknown;P:unknown;C:plasma membrane, membrane;BOFAP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
62.5 99.8 GSM184482 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
56.3 99.8 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
52.4 99.8 GSM184483 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
39.6 99.8 GSM184481 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
39.3 99.8 GSM10480 lec1-1 Cotyledon Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
35.1 99.7 GSM10479 lec1-1 Cotyledon Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
34.1 99.7 E-MEXP-1443-raw-cel-1581869573
33.4 99.7 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
33.1 99.7 E-MEXP-475-raw-cel-680982449
32.2 99.7 GSM142786 HO001_ATH1_A3-Okamo-WS-ABA GSE6171 Comparative transcriptome analysis between wild-type and gpa1 mutant in response to ABA
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.83 0 668 At2g23910 816923 cinnamoyl-CoA reductase-related F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFM C.G. S.X.
0.03 1e-1 38 At4g14455 827091 ATBET12 Encodes a Bet1/Sft1-like SNARE protein, which can only partially suppresses the temperature-sensitive growth defect in sft1-1 yeast cells; however, it cannot support the deletion of the yeast BET1 gene (bet1Δ). In yeast, Bet1p is the v-SNARE (soluble N-ethylmaleimide-sensitive factor adaptor protein receptor, V-type) involved in trafficking between the ER and Golgi. C.G. S.X.
0.02 4e-1 36 At5g51170 835191 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO C.G. S.X.
0.01 4e-1 36 At5g18860 832004 inosine-uridine preferring nucleoside hydrolase family protein F:hydrolase activity;P:biological_process unknown;C:cell wall;BOMPFA C.G. S.X.
0.02 4e-1 36 At4g17880 827511 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOVB C.G. S.X.
0.01 4e-1 36 At3g14172 5007999 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVA C.G. S.X.
0.01 4e-1 36 At1g48860 841308 3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative F:3-phosphoshikimate 1-carboxyvinyltransferase activity, catalytic activity, transferase activity, transferring alkyl or aryl (other than methyl) groups;P:glyphosate metabolic process, aromatic amino acid family biosynthetic process;C:chloroplast;BOPAFM C.G. S.X.
0.01 4e-1 36 At1g80410 844381 EMB2753 (EMBRYO DEFECTIVE 2753) F:binding;P:embryonic development ending in seed dormancy;C:membrane;OBMAFPV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-1 36 Glycine max HgAffx.13763.1.S1_at CB374219 - - 2e-1 At4g30470 cinnamoyl-CoA reductase-related C.G. S.X.
0.04 3e+0 32 Hordeum vulgare Contig22545_at Contig22545 - - 7e+0 At2g27315 unknown protein C.G. S.X.
0.03 4e+0 34 Oryza sativa OsAffx.24448.1.S1_at - - - 0 C.G. S.X.
0.08 4e-2 40 Populus trichocarpa PtpAffx.161181.1.S1_at CN549994 hypothetical protein - 3e-1 At2g23910 cinnamoyl-CoA reductase-related C.G. S.X.
0.05 1e-1 38 Triticum aestivum Ta.10648.1.S1_x_at BQ166184 - - 2e-1 At4g30470 cinnamoyl-CoA reductase-related C.G. S.X.
0.04 2e-3 42 Vitis vinifera 1619065_at CB972322 hypothetical protein LOC100253987 - 1e-2 At4g30470 cinnamoyl-CoA reductase-related C.G. S.X.
0.02 3e+0 32 Zea mays Zm.76.1.A1_at BG842749 ascorbate peroxidase2 - 3e-27 At1g07890 APX1 (ascorbate peroxidase 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009809 The chemical reactions and pathways resulting in the formation of lignins, a class of polymers formed by the dehydrogenetive radical polymerization of various phenylpropanoid monomers.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
L GO:0044237 The chemical reactions and pathways by which individual cells transform chemical substances.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00064 The cinnamate-monolignol pathway/sinapoyl ester biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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