CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g30460

Gene name glycine-rich protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.93 96.4 At4g30460 829169 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA S.X. H.G.
0.67 81.6 At1g18880 838469 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PMBFO S.X. H.G.
0.67 81.6 At3g53980 824565 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.60 75.7 At5g25890 832658 IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28) encodes a protein that may be a negative regulator of lateral root formation in response to auxin. It is a member of IAA/ARF gene family and is plant-specific. Gain of function mutations in this gene suppresses lateral root formation and is resistant to inhibition of root elongation by auxin, cytokinin, and ethylene. S.X. H.G.
0.50 65.3 At4g30450 829168 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVA S.X. H.G.
0.44 57.2 At2g40900 818687 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BOPAM S.X. H.G.
0.43 55.3 At3g16340 820881 PDR1 F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMFAPV S.X. H.G.
0.40 50.8 At5g43180 834336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
211.2 100.0 GSM142624 MC002_ATH1_A1.2-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
199.7 100.0 GSM142625 MC002_ATH1_A1.3-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
185.0 100.0 GSM142636 MC002_ATH1_A5.2-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
130.8 99.9 GSM142631 MC002_ATH1_A3.3-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
124.2 99.9 GSM142637 MC002_ATH1_A5.3-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
122.3 99.9 GSM142635 MC002_ATH1_A5.1-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
114.3 99.9 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
103.9 99.9 GSM142653 MC002_ATH1_A11.1-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
102.4 99.9 GSM142629 MC002_ATH1_A3.1-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
92.9 99.9 GSM142630 MC002_ATH1_A3.2-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 3e-4 46 At4g30450 829168 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVA C.G. S.X.
0.02 4e-3 42 At4g17620 827482 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMFPVA C.G. S.X.
0.06 1e-2 40 At5g16950 831558 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 1e-2 40 At1g80070 844347 SUS2 (ABNORMAL SUSPENSOR 2) a genetic locus involved in embryogenesis. Mutations in this locus result in an abnormal suspensor and embryo lethality. C.G. S.X.
0.06 6e-2 38 At5g46730 834716 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA C.G. S.X.
0.03 6e-2 38 At5g21280 832258 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:unknown;MPOFBVA C.G. S.X.
0.01 2e-1 36 At5g07770 830670 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:unknown;C:chloroplast;MPOFBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-3 42 Glycine max GmaAffx.10340.1.S1_x_at CA938421 - - 3e+0 At1g05880 nucleic acid binding / protein binding / structural molecule/ zinc ion binding C.G. S.X.
0.10 3e-2 38 Hordeum vulgare Contig11540_s_at Contig11540 - - 3e+0 At3g44190 pyridine nucleotide-disulphide oxidoreductase family protein C.G. S.X.
0.09 8e-3 42 Oryza sativa Os06g0317200 AK062457.1 - Glycine-rich protein (Fragment) 5e-3 At4g38680 GRP2 (GLYCINE RICH PROTEIN 2) C.G. S.X.
0.07 6e-6 52 Populus trichocarpa PtpAffx.22809.2.S1_a_at CF228627 hypothetical protein - 5e-6 At4g30460 glycine-rich protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum Ta.23904.1.S1_at CA735690 - - 2e-1 At1g53620 unknown protein C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1621435_s_at CF515294 hypothetical protein LOC100253802 - 2e+0 At2g18040 PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1) C.G. S.X.
0.04 4e-1 34 Zea mays ZmAffx.60.1.S1_at AI665094 - - 8e-1 At2g41650 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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