CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g30420

Gene name nodulin MtN21 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.27 26.2 At4g30420 829165 nodulin MtN21 family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;BOPAM S.X. H.G.
0.50 65.3 At3g01220 821232 ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity. S.X. H.G.
0.40 50.8 At5g15150 831367 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3) homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem. S.X. H.G.
0.36 43.6 At3g50640 824227 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.27 26.2 At5g01320 830867 pyruvate decarboxylase, putative F:in 6 functions;P:unknown;C:cellular_component unknown;BOFPAMV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
347.5 100.0 GSM184895 Arabidopsis, root cells, cortex, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
220.3 100.0 GSM184896 Arabidopsis, root cells, cortex, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
193.5 100.0 GSM184897 Arabidopsis, root cells, cortex, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
65.6 99.8 GSM142755 MJ001_ATH1_A6-jones-RH-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
60.1 99.8 GSM184504 Pericycle root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
58.9 99.8 GSM142753 MJ001_ATH1_A4-jones-rh2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
55.2 99.8 GSM142732 CH001_ATH1_A011-Hampt-c4c GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
51.6 99.8 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
50.9 99.8 GSM27361 WT Root GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
50.4 99.8 GSM142733 CH001_ATH1_A012-Hampt-c1c GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 1e-1 38 At3g28130 822437 nodulin MtN21 family protein F:unknown;P:biological_process unknown;C:membrane;PBOMA C.G. S.X.
0.02 6e-1 36 At5g39870 833984 unknown protein F:unknown;P:unknown;C:endomembrane system;POBMA C.G. S.X.
0.01 6e-1 36 At5g40470 834045 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOFB C.G. S.X.
0.01 6e-1 36 At1g10300 837569 GTP-binding protein-related F:GTP binding;P:unknown;C:unknown;BOMFAPV C.G. S.X.
0.01 6e-1 36 At1g59910 842285 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MBOFPVA C.G. S.X.
0.01 2e+0 34 At5g05260 830408 CYP79A2 (CYTOCHROME P450 79A2) Encodes cytochrome P450 CYP79A2. C.G. S.X.
0.02 2e+0 34 At5g44220 834445 F-box family protein F:unknown;P:unknown;C:unknown;P C.G. S.X.
0.01 2e+0 34 At5g52340 835310 ATEXO70A2 (exocyst subunit EXO70 family protein A2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 36 Glycine max HgAffx.19582.1.S1_at CD748271 - - 5e+0 At3g10780 emp24/gp25L/p24 family protein C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig141_at Contig141 - - 9e-45 At1g09200 histone H3 C.G. S.X.
0.02 4e+0 34 Oryza sativa Os.46654.1.S1_at - - - 0 C.G. S.X.
0.11 8e-4 46 Populus trichocarpa PtpAffx.214428.1.S1_at pmrna28061 hypothetical protein - 5e-4 At4g30420 nodulin MtN21 family protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.80011.1.S1_at CA704318 - - 5e-2 At1g27400 60S ribosomal protein L17 (RPL17A) C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1610377_at CF413900 - - 5e-1 At5g54410 unknown protein C.G. S.X.
0.02 9e-1 34 Zea mays Zm.15640.1.A1_at BM075602 hypothetical protein LOC100280329 - 1e+0 At2g10560 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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