CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g30410

Gene name transcription factor

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At4g30410 829164 transcription factor F:transcription factor activity;P:unknown;C:unknown;PO S.X. H.G.
0.50 65.3 At3g12710 820453 methyladenine glycosylase family protein F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAM S.X. H.G.
0.44 57.2 At5g48900 834948 pectate lyase family protein F:lyase activity, pectate lyase activity;P:unknown;C:endomembrane system;PBFO S.X. H.G.
0.36 43.6 At1g75780 843911 TUB1 beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses S.X. H.G.
0.33 38.1 At3g12610 820441 DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100) Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. S.X. H.G.
0.25 22.6 At1g11545 837698 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBO S.X. H.G.
0.23 19.3 At4g16670 827369 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
122.6 99.9 E-MEXP-1474-raw-cel-1593932673
85.5 99.9 E-MEXP-1474-raw-cel-1593932609
81.5 99.9 GSM133719 Deeken_A-1-Deeke-Tum_SLD_REP1 GSE5725 Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
77.2 99.9 E-MEXP-1474-raw-cel-1593932801
75.2 99.9 E-MEXP-1474-raw-cel-1593932865
60.9 99.8 E-MEXP-1474-raw-cel-1593932769
60.8 99.8 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
56.8 99.8 GSM226547 Slice5JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
52.1 99.8 E-MEXP-1474-raw-cel-1593932577
48.7 99.8 E-MEXP-1474-raw-cel-1593932705
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 3e-1 36 At4g17380 827450 MSH4 (MUTS HOMOLOG 4) Encodes the Arabidopsis homolog of MSH4, a meiosis-specific member of the MutS-homolog family of genes. It is expressed only in floral tissues and only during early meiotic prophase I, preceding the synapsis of homologous chromosomes. It is involved in the early steps of recombination. C.G. S.X.
0.01 3e-1 36 At4g36870 829840 BLH2 (BEL1-LIKE HOMEODOMAIN 2) Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw1/saw2 may act redundantly to repress BP in leaves. C.G. S.X.
0.02 1e+0 34 At5g38570 833846 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 1e+0 34 At5g22830 832346 ATMGT10 (MAGNESIUM (MG) TRANSPORTER 10) putative Mg(2+) transport protein C.G. S.X.
0.03 1e+0 34 At3g60720 825243 PDLP8 (PLASMODESMATA-LOCATED PROTEIN 8) Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.25991.1.S1_at AW734966 - - 2e-7 At4g32770 VTE1 (VITAMIN E DEFICIENT 1) C.G. S.X.
0.04 2e+0 32 Hordeum vulgare EBro02_SQ003_O24_at EBro02_SQ003_O24 - - 3e+0 At4g30410 transcription factor C.G. S.X.
0.05 2e+0 34 Oryza sativa Os05g0464900 9633.m03618 - - 4e-1 At4g30410 transcription factor C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.4633.3.S1_at CV225507 - - 2e-57 At1g07820 histone H4 C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.107252.1.S1_at CA703600 - - 2e+0 At4g30410 transcription factor C.G. S.X.
0.07 8e-5 46 Vitis vinifera 1613269_at CB914077 - - 4e-4 At4g30410 transcription factor C.G. S.X.
0.03 1e-1 36 Zea mays Zm.9576.1.A1_at CD999634 iron-sulfur assembly protein IscA - 3e-4 At1g10500 ATCPISCA (chloroplast-localized IscA-like protein) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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