Gene omics information

Query gene ID At4g30410
Gene name transcription factor
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At4g30410829164transcription factorF:transcription factor activity;P:unknown;C:unknown;POS.X.H.G.
0.5065.3At3g12710820453methyladenine glycosylase family proteinF:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMS.X.H.G.
0.4457.2At5g48900834948pectate lyase family proteinF:lyase activity, pectate lyase activity;P:unknown;C:endomembrane system;PBFOS.X.H.G.
0.3643.6At1g75780843911TUB1beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responsesS.X.H.G.
0.3338.1At3g12610820441DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100)Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes.S.X.H.G.
0.2522.6At1g11545837698xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOS.X.H.G.
0.2319.3At4g16670827369phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFOS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
81.599.9GSM133719Deeken_A-1-Deeke-Tum_SLD_REP1GSE5725Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
60.899.8GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
56.899.8GSM226547Slice5JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.013e-136At4g17380827450MSH4 (MUTS HOMOLOG 4)Encodes the Arabidopsis homolog of MSH4, a meiosis-specific member of the MutS-homolog family of genes. It is expressed only in floral tissues and only during early meiotic prophase I, preceding the synapsis of homologous chromosomes. It is involved in the early steps of recombination.C.G.S.X.
0.013e-136At4g36870829840BLH2 (BEL1-LIKE HOMEODOMAIN 2)Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw1/saw2 may act redundantly to repress BP in leaves.C.G.S.X.
0.021e+034At5g38570833846F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.021e+034At5g22830832346ATMGT10 (MAGNESIUM (MG) TRANSPORTER 10)putative Mg(2+) transport proteinC.G.S.X.
0.031e+034At3g60720825243PDLP8 (PLASMODESMATA-LOCATED PROTEIN 8)Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxGmaAffx.25991.1.S1_atAW734966--2e-7At4g32770VTE1 (VITAMIN E DEFICIENT 1)C.G.S.X.
0.042e+032Hordeum vulgareEBro02_SQ003_O24_atEBro02_SQ003_O24--3e+0At4g30410transcription factorC.G.S.X.
0.052e+034Oryza sativaOs05g04649009633.m03618--4e-1At4g30410transcription factorC.G.S.X.
0.032e+034Populus trichocarpaPtpAffx.4633.3.S1_atCV225507--2e-57At1g07820histone H4C.G.S.X.
0.044e+032Triticum aestivumTaAffx.107252.1.S1_atCA703600--2e+0At4g30410transcription factorC.G.S.X.
0.078e-546Vitis vinifera1613269_atCB914077--4e-4At4g30410transcription factorC.G.S.X.
0.031e-136Zea maysZm.9576.1.A1_atCD999634iron-sulfur assembly protein IscA-3e-4At1g10500ATCPISCA (chloroplast-localized IscA-like protein)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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