CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g30360

Gene name ATCNGC17

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At4g30360 829159 ATCNGC17 member of Cyclic nucleotide gated channel family S.X. H.G.
0.60 75.7 At4g25970 828703 PSD3 (phosphatidylserine decarboxylase 3) Encodes the major form of the two non-mitochondrail phosphatidylserine decarboxylase. Located at the ER. S.X. H.G.
0.32 35.7 At5g35560 833521 DENN (AEX-3) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFP S.X. H.G.
0.17 10.2 At4g40050 830168 signal transducer F:signal transducer activity;P:biological_process unknown;C:cellular_component unknown;MPO S.X. H.G.
0.12 4.9 At5g18525 2745988 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:CUL4 RING ubiquitin ligase complex;BMFOPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
39.1 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
34.1 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
29.9 99.7 GSM142629 MC002_ATH1_A3.1-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
24.5 99.6 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
21.2 99.6 GSM142633 MC002_ATH1_A4.2-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
21.0 99.6 GSM142625 MC002_ATH1_A1.3-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
21.0 99.6 GSM142634 MC002_ATH1_A4.3-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
20.2 99.6 GSM142627 MC002_ATH1_A2.2-dubos-wtc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
19.2 99.6 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
19.2 99.6 GSM142628 MC002_ATH1_A2.3-dubos-wtc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.20 2e-27 125 At2g24610 816997 ATCNGC14 member of Cyclic nucleotide gated channel family C.G. S.X.
0.06 2e-14 81 At4g30560 829179 ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9) member of Cyclic nucleotide gated channel family C.G. S.X.
0.07 5e-12 73 At1g15990 838169 ATCNGC7 (CYCLIC NUCLEOTIDE GATED CHANNEL 7) member of Cyclic nucleotide gated channel family C.G. S.X.
0.07 8e-11 69 At5g53130 835393 CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1) member of Cyclic nucleotide gated channel family C.G. S.X.
0.12 3e-10 67 At5g14870 831339 CNGC18 (CYCLIC NUCLEOTIDE-GATED CHANNEL 18) Encodes a member of the cyclic nucleotide gated channel family that is asymmetrically localized to the plasma membrane at the growing tip of the pollen tube and is involved in pollen tube growth. It likely directly transduces a cNMP signal into an ion flux that can produce a localized signal capable of regulating the pollen tip-growth machinery. C.G. S.X.
0.07 1e-9 65 At1g19780 838566 ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8) member of Cyclic nucleotide gated channel family C.G. S.X.
0.09 7e-8 59 At5g57940 835905 ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5) member of Cyclic nucleotide gated channel family C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 1e-38 163 Glycine max Gma.7365.1.S1_at CD412721 - - 6e-39 At4g30360 ATCNGC17 C.G. S.X.
0.05 2e-3 44 Hordeum vulgare Contig14060_at Contig14060 - - 3e-3 At4g30360 ATCNGC17 C.G. S.X.
0.13 4e-11 71 Oryza sativa Os06g0188000 AK066305.1 - Cyclic nucleotide-gated channel C (Fragment) 1e-11 At4g30360 ATCNGC17 C.G. S.X.
0.31 8e-24 113 Populus trichocarpa PtpAffx.225079.1.S1_at pmrna44172 hypothetical protein - 5e-24 At4g30360 ATCNGC17 C.G. S.X.
0.07 5e-3 44 Triticum aestivum Ta.8023.1.S1_at CA640979 - - 4e-3 At4g30360 ATCNGC17 C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1612008_at CF604996 hypothetical protein LOC100243222 - 1e+0 At4g08790 nitrilase, putative C.G. S.X.
0.01 2e+0 34 Zea mays ZmAffx.1536.1.S1_at 40794996-127 - - 1e+1 At3g61390 U-box domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006811 The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
L GO:0006813 The directed movement of potassium ions (K+) into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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