CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g30280

Gene name XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.81 90.4 At4g30280 829151 XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18) putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs. S.X. H.G.
0.85 92.4 At4g26200 828726 ACS7 Member of a family of proteins in Arabidopsis that encode 1-Amino-cyclopropane-1-carboxylate synthase, an enzyme involved in ethylene biosynthesis. Not expressed in response to IAA. S.X. H.G.
0.79 89.1 At5g66620 836794 DAR6 (DA1-RELATED PROTEIN 6) F:zinc ion binding;P:unknown;C:unknown;MOBFPVA S.X. H.G.
0.77 88.0 At1g51620 841587 protein kinase family protein F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.77 88.0 At1g30135 839893 JAZ8 (JASMONATE-ZIM-DOMAIN PROTEIN 8) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.77 88.0 At4g38420 829999 sks9 (SKU5 Similar 9) F:oxidoreductase activity, copper ion binding;P:unknown;C:plant-type cell wall;FBPMOA S.X. H.G.
0.76 87.4 At2g14290 815916 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
0.76 87.4 At1g22810 838887 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. S.X. H.G.
0.75 86.9 At4g25810 828686 XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6) xyloglucan endotransglycosylase-related protein (XTR6) S.X. H.G.
0.74 86.1 At4g37770 829933 ACS8 Encodes an auxin inducible ACC synthase. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
251.5 100.0 E-MEXP-807-raw-cel-1173273060
232.2 100.0 E-MEXP-807-raw-cel-1173273223
218.8 100.0 E-MEXP-807-raw-cel-1173273088
170.7 100.0 E-MEXP-807-raw-cel-1173273116
165.1 100.0 E-MEXP-807-raw-cel-1173273144
152.1 99.9 E-MEXP-807-raw-cel-1173273196
144.0 99.9 E-MEXP-807-raw-cel-1173273252
141.2 99.9 E-MEXP-807-raw-cel-1173273170
104.1 99.9 E-MEXP-807-raw-cel-1173272948
84.5 99.9 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.92 0 1160 At1g65310 842839 XTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17) putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs. C.G. S.X.
0.87 0 924 At4g30290 829152 XTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19) putative xyloglucan endotransglycosylase/hydrolase, expressed throughout both the main and the lateral root, with intensive expression at the dividing and elongating regions. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow. C.G. S.X.
0.83 0 743 At5g48070 834859 XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20) putative xyloglucan endotransglycosylase/hydrolase, expressed primarily in the stele of mature non-elongating regions of both the main and the lateral root. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow. C.G. S.X.
0.16 8e-15 81 At4g30270 829150 MERI5B (meristem-5) encodes a protein similar to endo xyloglucan transferase in sequence. It is also very similar to BRU1 in soybean, which is involved in brassinosteroid response. C.G. S.X.
0.20 8e-12 71 At5g57560 835860 TCH4 (Touch 4) Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli C.G. S.X.
0.07 5e-10 65 At4g25810 828686 XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6) xyloglucan endotransglycosylase-related protein (XTR6) C.G. S.X.
0.19 1e-7 57 At5g57550 835859 XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3) xyloglucan endotransglycosylase-related protein (XTR3) C.G. S.X.
0.03 7e-6 52 At5g57530 835857 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:cell wall, cytoplasm;PFBO C.G. S.X.
0.07 1e-4 48 At3g23730 821955 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 3e-24 113 Glycine max Gma.4027.1.S1_at BQ629007 - - 3e-12 At4g30270 MERI5B (meristem-5) C.G. S.X.
0.03 8e-1 34 Hordeum vulgare HM02O12u_at HM02O12u - - 6e-1 At4g30280 XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18) C.G. S.X.
0.06 2e-1 38 Oryza sativa Os08g0240500 CB000335 - Glycoside hydrolase, family 16 protein 1e+0 At4g14130 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) C.G. S.X.
0.25 7e-10 65 Populus trichocarpa PtpAffx.214394.1.S1_at pmrna28006 hypothetical protein - 8e-18 At4g30270 MERI5B (meristem-5) C.G. S.X.
0.04 4e-1 36 Triticum aestivum TaAffx.15847.2.S1_at CA721853 - - 1e-3 At5g57550 XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3) C.G. S.X.
0.12 2e-6 52 Vitis vinifera 1609790_at CF207994 hypothetical protein LOC100252173 - 1e-10 At3g23730 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.03 7e-1 34 Zea mays Zm.6756.1.S1_s_at AI855348 ethylene responsive element binding protein 2 - 1e+1 At4g30280 XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
L GO:0006073 The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase
00437 Xyloglucan biosynthesis and modification

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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