Gene omics information

Query gene ID At4g30280
Gene name XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8190.4At4g30280829151XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18)putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.S.X.H.G.
0.8592.4At4g26200828726ACS7Member of a family of proteins in Arabidopsis that encode 1-Amino-cyclopropane-1-carboxylate synthase, an enzyme involved in ethylene biosynthesis. Not expressed in response to IAA.S.X.H.G.
0.7989.1At5g66620836794DAR6 (DA1-RELATED PROTEIN 6)F:zinc ion binding;P:unknown;C:unknown;MOBFPVAS.X.H.G.
0.7788.0At1g51620841587protein kinase family proteinF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAS.X.H.G.
0.7788.0At1g30135839893JAZ8 (JASMONATE-ZIM-DOMAIN PROTEIN 8)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7788.0At4g38420829999sks9 (SKU5 Similar 9)F:oxidoreductase activity, copper ion binding;P:unknown;C:plant-type cell wall;FBPMOAS.X.H.G.
0.7687.4At2g14290815916F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBS.X.H.G.
0.7687.4At1g22810838887AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.S.X.H.G.
0.7586.9At4g25810828686XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)xyloglucan endotransglycosylase-related protein (XTR6)S.X.H.G.
0.7486.1At4g37770829933ACS8Encodes an auxin inducible ACC synthase.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
251.5100.0E-MEXP-807-raw-cel-1173273060
232.2100.0E-MEXP-807-raw-cel-1173273223
218.8100.0E-MEXP-807-raw-cel-1173273088
170.7100.0E-MEXP-807-raw-cel-1173273116
165.1100.0E-MEXP-807-raw-cel-1173273144
152.199.9E-MEXP-807-raw-cel-1173273196
144.099.9E-MEXP-807-raw-cel-1173273252
141.299.9E-MEXP-807-raw-cel-1173273170
104.199.9E-MEXP-807-raw-cel-1173272948
84.599.9GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.9201160At1g65310842839XTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17)putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.C.G.S.X.
0.870924At4g30290829152XTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19)putative xyloglucan endotransglycosylase/hydrolase, expressed throughout both the main and the lateral root, with intensive expression at the dividing and elongating regions. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.C.G.S.X.
0.830743At5g48070834859XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20)putative xyloglucan endotransglycosylase/hydrolase, expressed primarily in the stele of mature non-elongating regions of both the main and the lateral root. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.C.G.S.X.
0.168e-1581At4g30270829150MERI5B (meristem-5)encodes a protein similar to endo xyloglucan transferase in sequence. It is also very similar to BRU1 in soybean, which is involved in brassinosteroid response.C.G.S.X.
0.208e-1271At5g57560835860TCH4 (Touch 4)Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuliC.G.S.X.
0.075e-1065At4g25810828686XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)xyloglucan endotransglycosylase-related protein (XTR6)C.G.S.X.
0.191e-757At5g57550835859XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)xyloglucan endotransglycosylase-related protein (XTR3)C.G.S.X.
0.037e-652At5g57530835857xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:cell wall, cytoplasm;PFBOC.G.S.X.
0.071e-448At3g23730821955xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.203e-24113Glycine maxGma.4027.1.S1_atBQ629007--3e-12At4g30270MERI5B (meristem-5)C.G.S.X.
0.038e-134Hordeum vulgareHM02O12u_atHM02O12u--6e-1At4g30280XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18)C.G.S.X.
0.062e-138Oryza sativaOs08g0240500CB000335-Glycoside hydrolase, family 16 protein1e+0At4g14130XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)C.G.S.X.
0.257e-1065Populus trichocarpaPtpAffx.214394.1.S1_atpmrna28006hypothetical protein-8e-18At4g30270MERI5B (meristem-5)C.G.S.X.
0.044e-136Triticum aestivumTaAffx.15847.2.S1_atCA721853--1e-3At5g57550XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)C.G.S.X.
0.122e-652Vitis vinifera1609790_atCF207994hypothetical protein LOC100252173-1e-10At3g23730xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeC.G.S.X.
0.037e-134Zea maysZm.6756.1.S1_s_atAI855348ethylene responsive element binding protein 2-1e+1At4g30280XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0005975The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
LGO:0006073The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00412Link to KaPPA-View 4Glycoside Hydrolase
00437Link to KaPPA-View 4Xyloglucan biosynthesis and modification



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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