Gene omics information

Query gene ID At4g30220
Gene name RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8693.1At4g30220829145RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)F:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;AMFOPS.X.H.G.
0.6982.9At3g2223082178760S ribosomal protein L27 (RPL27B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOFPS.X.H.G.
0.6579.6At3g5954082512360S ribosomal protein L38 (RPL38B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPAS.X.H.G.
0.6378.1At3g0492081965240S ribosomal protein S24 (RPS24A)F:structural constituent of ribosome, nucleotide binding;P:translation, ribosome biogenesis;C:in 7 components;MOFPAS.X.H.G.
0.6075.7At3g5374082454160S ribosomal protein L36 (RPL36B)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane, membrane;MPOFS.X.H.G.
0.6075.7At1g3403084030040S ribosomal protein S18 (RPS18B)F:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:in 6 components;BOPMAFS.X.H.G.
0.5974.7At4g1500082715960S ribosomal protein L27 (RPL27C)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, intracellular;MOFPS.X.H.G.
0.5974.7At2g39460818531RPL23AA (RIBOSOMAL PROTEIN L23AA)Encodes a 60S ribosomal protein L23aA (AtrpL23aA). Paralog of RLPL23aB.S.X.H.G.
0.5873.8At3g55280824694RPL23AB (RIBOSOMAL PROTEIN L23AB)60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aAS.X.H.G.
0.5773.8At3g5389082455640S ribosomal protein S21 (RPS21B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFOPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
12.799.3E-MEXP-509-raw-cel-829148666
10.699.2E-MEXP-509-raw-cel-829148385
10.499.2GSM184832Arabidopsis, root, longitudinal zone 1, standard conditions, replicate 2GSE7639Expression analysis of root developmental zones after treatment with salt
9.599.1GSM311287Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
9.599.1GSM284385Arabidopsis GEP6GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
9.099.1GSM47019Ler 9GSE2473Small RNA biogenesis mutants
8.999.0GSM134310Penfield_1-12_embryo-control_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
8.198.9GSM184831Arabidopsis, root, longitudinal zone 1, standard conditions, replicate 1GSE7639Expression analysis of root developmental zones after treatment with salt
8.098.9GSM134308Penfield_1-10_embryo-control_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
7.998.9GSM311273Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.762e-68258At2g142855007874-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOAPC.G.S.X.
0.023e-238At5g39460833942F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.013e-238At1g04920839382ATSPS3F (sucrose phosphate synthase 3F)Encodes a protein with putative sucrose-phosphate synthase activity.C.G.S.X.
0.065e-134At5g41765834181unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.065e-134At4g00232826492unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.015e-134At4g09160826497SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinF:transporter activity;P:transport;C:chloroplast;MOFBPVAC.G.S.X.
0.045e-134At4g08670826433protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;OPMBFVC.G.S.X.
0.015e-134At1g75660843900XRN3Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products.C.G.S.X.
0.022e+032At5g65200836643PUB38 (PLANT U-BOX 38)Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.365e-1477Glycine maxGma.8349.1.S1_atCD408617--9e-14At4g30220RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)C.G.S.X.
0.242e-1167Hordeum vulgareContig12490_atContig12490--9e-11At4g30220RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)C.G.S.X.
0.495e-1891Oryza sativaOsAffx.2545.1.S1_at---0C.G.S.X.
0.397e-41167Populus trichocarpaPtpAffx.5925.1.S1_atDN494623hypothetical protein-1e-40At4g30220RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)C.G.S.X.
0.326e-1683Triticum aestivumTa.5254.1.S1_atBJ219348--2e-15At4g30220RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)C.G.S.X.
0.343e-30129Vitis vinifera1621679_atCB003331similar to Os11g0657300-4e-22At2g14285-C.G.S.X.
0.372e-1477Zea maysZm.3267.1.A1_atBE225116small nuclear ribonucleoprotein F-1e-13At4g30220RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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