Gene omics information

Query gene ID At4g30210
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7788.0At4g30210829144ATR2 (ARABIDOPSIS P450 REDUCTASE 2)Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway.S.X.H.G.
0.7586.9At1g28380839735NSL1 (necrotic spotted lesions 1)This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots.S.X.H.G.
0.6781.6At1g29690839846CAD1 (constitutively activated cell death 1)Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity.S.X.H.G.
0.6781.6At3g59080825077aspartyl protease family proteinF:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOS.X.H.G.
0.6075.7At5g26030832672FC1 (ferrochelatase 1)encodes ferrochelatase I located in plastids. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteinsS.X.H.G.
0.5773.8At3g53810824548lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
86.299.9GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
81.599.9GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
76.599.9GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
67.599.8GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.143e-1067At4g24520828554ATR1 (ARABIDOPSIS P450 REDUCTASE 1)Encodes a cyp450 reductase likely to be involved in phenylpropanoid metabolism.C.G.S.X.
0.012e-242At2g33050817867AtRLP26 (Receptor Like Protein 26)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVC.G.S.X.
0.017e-240At5g57870835897eukaryotic translation initiation factor 4F, putative / eIF-4F, putativeF:protein binding, RNA binding, binding, translation initiation factor activity;P:translational initiation, translation, RNA metabolic process;C:nucleus, cytoplasm;MPOFBC.G.S.X.
0.013e-138At5g54910835582DEAD/DEAH box helicase, putativeF:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:nucleolus;BOMFPAVC.G.S.X.
0.013e-138At5g63650836485SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.C.G.S.X.
0.013e-138At4g31980829328unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.331e-25119Glycine maxGmaAffx.1301.38.S1_atCA802260--9e-26At4g30210ATR2 (ARABIDOPSIS P450 REDUCTASE 2)C.G.S.X.
0.189e-1271Hordeum vulgareContig5574_atContig5574--2e-11At4g30210ATR2 (ARABIDOPSIS P450 REDUCTASE 2)C.G.S.X.
0.234e-1171Oryza sativaOs08g0243500AK068915.1-NADPH--cytochrome P450 reductase (EC (P450R)3e-13At4g30210ATR2 (ARABIDOPSIS P450 REDUCTASE 2)C.G.S.X.
0.414e-38161Populus trichocarpaPtpAffx.8143.1.S1_s_atAF302497.1nadph-cytochrome P450 oxydoreductase-3e-38At4g30210ATR2 (ARABIDOPSIS P450 REDUCTASE 2)C.G.S.X.
0.156e-24113Triticum aestivumTa.620.1.S1_atAF123610.1--7e-24At4g30210ATR2 (ARABIDOPSIS P450 REDUCTASE 2)C.G.S.X.
0.382e-27123Vitis vinifera1609007_atCB003639hypothetical protein LOC100240979-5e-27At4g30210ATR2 (ARABIDOPSIS P450 REDUCTASE 2)C.G.S.X.
0.078e-652Zea maysZm.8825.1.A1_atBM378571hypothetical protein LOC100279923-1e-9At4g24520ATR1 (ARABIDOPSIS P450 REDUCTASE 1)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009698The chemical reactions and pathways involving aromatic derivatives of trans-cinnamic acid.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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