Gene omics information

Query gene ID At4g30060
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4659.8At4g30060829129unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBS.X.H.G.
0.5166.3At5g59450836064scarecrow-like transcription factor 11 (SCL11)F:transcription factor activity;P:response to chitin, regulation of transcription;C:cellular_component unknown;PBMOS.X.H.G.
0.5065.3At3g53810824548lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.4862.5At1g28380839735NSL1 (necrotic spotted lesions 1)This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots.S.X.H.G.
0.4862.5At1g11050837646protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.4862.5At3g57530824920CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32)Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitroS.X.H.G.
0.4558.3At3g09410820100pectinacetylesterase family proteinF:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOBS.X.H.G.
0.4457.2At1g29690839846CAD1 (constitutively activated cell death 1)Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity.S.X.H.G.
0.4457.2At4g01090827898extra-large G-protein-relatedF:unknown;P:unknown;C:unknown;MPFOBVS.X.H.G.
0.4457.2At1g07520837266scarecrow transcription factor family proteinF:transcription factor activity;P:response to chitin;C:cellular_component unknown;PBOMS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
46.699.8GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
44.699.8GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
34.399.7GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.710755At2g19160816433unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBC.G.S.X.
0.302e-31137At5g57270835832unknown proteinF:unknown;P:unknown;C:unknown;POBC.G.S.X.
0.283e-21103At4g25870828693unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POBC.G.S.X.
0.061e-242At4g31350829262unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.026e-136At5g09570830816-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMFOC.G.S.X.
0.012e+034At5g63750836495IBR domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:intracellular;MPOFC.G.S.X.
0.012e+034At5g06160830503ATO (ATROPOS)Encodes a protein with similarity to pre-mRNA splicing factor SF3a60 that is involved in gametic cell fate determination. Loss of function results in the ectopic expression of egg cell makers suggesting a role in restriction of gametic cell fate. Expressed strongly in gametophytes and weakly in sporophytes.C.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.092e-448Glycine maxGma.2301.1.S1_atBE820698--1e-10At4g25870unknown proteinC.G.S.X.
0.025e+032Hordeum vulgarerbags12c10_atrbags12c10--2e-2At3g50530CRK (CDPK-related kinase)C.G.S.X.
0.191e-965Oryza sativaOs.7468.1.S1_at---0C.G.S.X.
0.274e-1583Populus trichocarpaPtpAffx.147997.1.S1_a_atBU875360hypothetical protein-1e-14At2g19160unknown proteinC.G.S.X.
0.132e-448Triticum aestivumTa.9125.1.S1_atCD902549--2e-4At4g30060unknown proteinC.G.S.X.
0.023e+032Vitis vinifera1616978_atCB981476--8e-23At5g54780RAB GTPase activatorC.G.S.X.
0.057e-548Zea maysZm.10328.1.S1_atBI396133hypothetical protein LOC100276287-2e-8At2g19160unknown proteinC.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage