CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g30020

Gene name subtilase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g30020 829125 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system, cell wall, membrane;BPOFAM S.X. H.G.
0.40 50.8 At5g55230 835616 ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1) Binds and bundles microtubules. Plays a role in stabilizing anti-parallel microtubules in the central spindle at anaphase to early cytokinesis but is not essential at the midline of the phragmoplast at later stages. The timing with which the MAP65-1 was targeted to the spindle appears to be regulated by a phosphorylation sensitive switch. Enhances microtubule polymerization, promotes nucleation and stabilizes microtubules against cold treatment and dilution. S.X. H.G.
0.33 38.1 At5g40150 834012 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB S.X. H.G.
0.31 33.8 At1g79500 844288 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall rhamnogalacturonan II. S.X. H.G.
0.29 30.3 At1g24120 839024 ARL1 (ARG1-LIKE 1) encodes a DnaJ-like protein similar to ARG1 and ARL2 that are both involved in root and hypocotyl gravitropism response. However, null mutation in this gene does not result in defects in gravitropism. Gene is expressed in all tissues examined. S.X. H.G.
0.29 30.3 At3g60380 825209 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.28 30.3 At4g32330 829367 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.28 30.3 At5g60940 836215 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA S.X. H.G.
0.27 26.2 At3g25500 822136 AFH1 (FORMIN HOMOLOGY 1) Poly-L-proline-containing (PLP) protein that form part of the signal-transduction cascade that leads to rearrangement of the actin cytoskeleton. AFH1 is a nonprocessive formin that moves from the barbered end to the side of an actin filament after the nucleation event. S.X. H.G.
0.26 24.4 At5g62890 836409 permease, putative F:transmembrane transporter activity;P:transport;C:cell wall, vacuole, membrane;BOMPFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
57.7 99.8 E-MEXP-1474-raw-cel-1593932673
54.3 99.8 E-MEXP-1474-raw-cel-1593932481
52.1 99.8 E-MEXP-1474-raw-cel-1593932577
48.6 99.8 GSM134208 Murray_3-4_D7-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
47.0 99.8 GSM134206 Murray_3-3_D5-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
38.3 99.8 GSM142661 MB002_ATH1_A1-Eland-ch1 GSE6153 Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
37.2 99.7 E-MEXP-1474-raw-cel-1593932705
34.3 99.7 GSM133719 Deeken_A-1-Deeke-Tum_SLD_REP1 GSE5725 Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
31.5 99.7 E-MEXP-265-raw-cel-414617783
31.1 99.7 GSM142662 MB002_ATH1_A2-Eland-ch2 GSE6153 Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.78 0 1746 At2g19170 816434 SLP3 Encodes a novel subtilisin-like serine protease. C.G. S.X.
0.03 1e-3 46 At1g30600 839940 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM C.G. S.X.
0.01 5e-3 44 At1g08190 837340 vacuolar assembly protein, putative (VPS41) F:protein binding, binding, nucleotide binding, zinc ion binding;P:intracellular protein transport, vesicle-mediated transport;C:unknown;MOFPVBA C.G. S.X.
0.01 3e-1 38 At2g01450 814673 ATMPK17 member of MAP Kinase C.G. S.X.
0.01 1e+0 36 At5g57100 835814 transporter-related F:unknown;P:unknown;C:membrane;PMFOB C.G. S.X.
0.01 1e+0 36 At5g39350 833931 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMFBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 5e-56 220 Glycine max GmaAffx.31477.1.A1_at CA784780 - - 7e-57 At4g30020 subtilase family protein C.G. S.X.
0.09 1e-14 81 Hordeum vulgare Contig12129_at Contig12129 - - 2e-14 At4g30020 subtilase family protein C.G. S.X.
0.18 3e-58 228 Oryza sativa Os06g0700000 AK102835.1 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 1e-53 At2g19170 SLP3 C.G. S.X.
0.48 4e-109 397 Populus trichocarpa PtpAffx.225099.1.S1_at pmrna44197 hypothetical protein - 3e-109 At4g30020 subtilase family protein C.G. S.X.
0.14 2e-18 95 Triticum aestivum Ta.29457.1.S1_at CK205969 - - 1e-18 At4g30020 subtilase family protein C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1610777_at CD797701 hypothetical protein LOC100263956 - 2e-42 At3g13670 protein kinase family protein C.G. S.X.
0.08 2e-6 54 Zea mays Zm.10200.1.A1_at BM379455 hypothetical protein LOC100274487 - 4e-6 At4g30020 subtilase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
L GO:0043086 Any process that stops or reduces the activity of an enzyme.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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