CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g29800

Gene name PLP8 (PATATIN-LIKE PROTEIN 8)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.28 30.3 At4g29800 829102 PLP8 (PATATIN-LIKE PROTEIN 8) F:unknown;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOFM S.X. H.G.
0.92 96.0 At3g50400 824204 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.92 96.0 At5g13900 831237 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P S.X. H.G.
0.86 93.1 At1g03700 839428 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.83 91.4 At1g54540 841896 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.77 88.0 At5g19410 832061 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast, membrane;BOMFAPV S.X. H.G.
0.47 61.2 At1g56320 842085 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
0.42 53.9 At5g09520 830811 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
243.7 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
162.9 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
134.3 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
124.5 99.9 GSM184838 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8 GSE7639 Expression analysis of root developmental zones after treatment with salt
108.4 99.9 GSM265413 Arabidopsis, whole roots, -Fe, replicate 3 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
107.8 99.9 GSM226549 Slice7JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
99.2 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
96.7 99.9 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
76.4 99.9 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
75.2 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.12 8e-7 56 At2g39220 818507 PLP6 (PATATIN-LIKE PROTEIN 6) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:unknown;PBOMF C.G. S.X.
0.01 1e-2 42 At2g43210 818922 UBX domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV C.G. S.X.
0.01 5e-2 40 At5g59730 836094 ATEXO70H7 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H7) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. C.G. S.X.
0.02 5e-2 40 At5g46730 834716 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA C.G. S.X.
0.02 5e-2 40 At4g19150 827653 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:unknown;MOFBPVA C.G. S.X.
0.04 5e-2 40 At3g54950 824660 PLA IIIA (PATATIN-LIKE PROTEIN 6) F:unknown;P:response to other organism;C:unknown;PBOFM C.G. S.X.
0.02 5e-2 40 At1g69690 843305 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:chloroplast;PMOFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 5e-3 44 Glycine max Gma.14325.1.S1_at BI700686 - - 4e-11 At3g54950 PLA IIIA (PATATIN-LIKE PROTEIN 6) C.G. S.X.
0.02 4e-1 36 Hordeum vulgare Contig16716_at Contig16716 - - 4e+0 At5g21170 5'-AMP-activated protein kinase beta-2 subunit, putative C.G. S.X.
0.02 6e-3 44 Oryza sativa Os03g0784100 9631.m05600 - Patatin family protein 3e-3 At4g29800 PLP8 (PATATIN-LIKE PROTEIN 8) C.G. S.X.
0.09 5e-12 73 Populus trichocarpa PtpAffx.22411.1.S1_at DN502986 hypothetical protein - 2e-17 At2g39220 PLP6 (PATATIN-LIKE PROTEIN 6) C.G. S.X.
0.03 1e-2 42 Triticum aestivum TaAffx.31305.1.S1_at CA617586 - - 3e-1 At3g17300 - C.G. S.X.
0.08 2e-1 36 Vitis vinifera 1610405_at CF405153 hypothetical protein LOC100246118 - 1e-20 At3g54950 PLA IIIA (PATATIN-LIKE PROTEIN 6) C.G. S.X.
0.02 1e+0 34 Zea mays Zm.15850.1.S1_at BM381062 metallothionein-like protein type 2 - 4e-7 At3g09390 MT2A (METALLOTHIONEIN 2A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006629 The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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