CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g29790

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At4g29790 829101 unknown protein F:molecular_function unknown;P:unknown;C:unknown;OMPFBV S.X. H.G.
0.71 84.2 At1g04790 839412 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
0.71 84.2 At3g13340 820534 WD-40 repeat family protein F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;BMFOPA S.X. H.G.
0.69 82.9 At1g56560 842110 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:unknown;OPB S.X. H.G.
0.68 82.2 At3g21290 821683 dentin sialophosphoprotein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BMOFPVA S.X. H.G.
0.65 79.6 At1g04830 839404 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPB S.X. H.G.
0.63 78.1 At3g01200 821293 AtRP2 (PPDK regulatory protein 2) Encodes a PPDK regulatory protein that has protein kinase activity but lacks protein phosphatase activity towards PPDK (pyruvate orthophosphate dikinase). S.X. H.G.
0.59 74.7 At4g33210 829457 F-box family protein (FBL15) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFBV S.X. H.G.
0.58 73.8 At2g39760 818561 BPM3 F:protein binding;P:biological_process unknown;C:unknown;MPOFV S.X. H.G.
0.55 70.6 At2g01600 814689 epsin N-terminal homology (ENTH) domain-containing protein F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:N-terminal protein myristoylation, clathrin coat assembly;C:membrane;MPFOB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
75.2 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
62.4 99.8 E-ATMX-35-raw-cel-1574334832
59.1 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
54.2 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
46.9 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.5 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.0 99.8 E-ATMX-35-raw-cel-1574334816
37.9 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
36.1 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.4 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.69 0 823 At2g19390 816458 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB C.G. S.X.
0.01 1e-1 40 At1g23420 838950 INO (INNER NO OUTER) Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule. C.G. S.X.
0.01 5e-1 38 At5g66100 836742 La domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMBFPVA C.G. S.X.
0.01 5e-1 38 At4g16620 827363 integral membrane family protein / nodulin MtN21-related F:molecular_function unknown;P:unknown;C:membrane;PBOFAM C.G. S.X.
0.01 5e-1 38 At4g36160 829773 ANAC076 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 76) Encodes a NAC-domain transcription factor. Expressed in the vascular tissue. C.G. S.X.
0.01 5e-1 38 At3g55070 824673 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPO C.G. S.X.
0.01 5e-1 38 At1g27510 839642 - F:unknown;P:response to singlet oxygen;C:thylakoid membrane;PMOFB C.G. S.X.
0.01 5e-1 38 At1g67460 843067 GTP binding / GTPase F:GTP binding, GTPase activity;P:biological_process unknown;C:unknown;BOAPM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-7 59 Glycine max Gma.941.1.A1_at BU549009 - - 3e-8 At4g29790 unknown protein C.G. S.X.
0.01 2e-1 38 Hordeum vulgare HB24M20r_s_at HB24M20r - - 7e-1 At1g68240 transcription factor C.G. S.X.
0.02 6e-8 61 Oryza sativa Os05g0350700 AK068211.1 - Hypothetical protein 4e-8 At4g29790 unknown protein C.G. S.X.
0.03 5e-11 71 Populus trichocarpa PtpAffx.206375.1.S1_at pmrna12660 hypothetical protein - 3e-7 At2g19390 unknown protein C.G. S.X.
0.01 5e-1 38 Triticum aestivum TaAffx.26634.1.S1_at CA686921 - - 6e-1 At3g55646 unknown protein C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1616336_at CB973472 hypothetical protein LOC100256840 - 1e+0 At1g17510 unknown protein C.G. S.X.
0.01 3e+0 34 Zea mays Zm.6008.1.S1_at CA401170 hypothetical protein LOC100216743 - 4e-2 At5g56600 PRF3 (PROFILIN 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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