CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g29780

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g29780 829100 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MPF S.X. H.G.
0.88 94.0 At2g30040 817555 MAPKKK14 member of MEKK subfamily S.X. H.G.
0.83 91.4 At4g34410 829591 RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.77 88.0 At2g05050 3767735 catalytic F:catalytic activity;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.75 86.9 At3g61190 825291 BAP1 (BON ASSOCIATION PROTEIN 1) Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis. S.X. H.G.
0.71 84.2 At1g80840 844423 WRKY40 Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. S.X. H.G.
0.61 76.7 At5g59820 836103 RHL41 (RESPONSIVE TO HIGH LIGHT 41) Encodes a zinc finger protein involved in high light and cold acclimation. Overexpression of this putative transcription factor increases the expression level of 9 cold-responsive genes and represses the expression level of 15 cold-responsive genes, including CBF genes. Also, lines overexpressing this gene exhibits a small but reproducible increase in freeze tolerance. Because of the repression of the CBF genes by the overexpression of this gene, the authors speculate that this gene may be involved in negative regulatory circuit of the CBF pathway. S.X. H.G.
0.58 73.8 At4g17500 827464 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
109.2 99.9 E-MEXP-807-raw-cel-1173273144
107.8 99.9 E-MEXP-807-raw-cel-1173273223
99.0 99.9 E-MEXP-807-raw-cel-1173273088
97.2 99.9 E-MEXP-807-raw-cel-1173273060
93.6 99.9 GSM266667 Arabidopsis, root cells, columella root cap, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
84.3 99.9 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
80.5 99.9 GSM218586 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
76.0 99.9 GSM184519 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
75.8 99.9 E-MEXP-807-raw-cel-1173273116
75.7 99.9 E-MEXP-807-raw-cel-1173273252
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.15 4e-9 63 At5g12010 831074 unknown protein F:unknown;P:response to salt stress;C:chloroplast, plasma membrane, membrane;MPFO C.G. S.X.
0.02 1e-2 42 At5g23100 832374 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 5e-2 40 At5g53060 835386 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBV C.G. S.X.
0.01 5e-2 40 At5g52060 835281 ATBAG1 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 1) A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. C.G. S.X.
0.02 5e-2 40 At5g44570 834484 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.02 5e-2 40 At3g10040 820165 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA C.G. S.X.
0.01 5e-2 40 At3g19120 821446 unknown protein F:unknown;P:unknown;C:chloroplast;MPFOV C.G. S.X.
0.01 5e-2 40 At3g19540 821490 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PMFVBO C.G. S.X.
0.01 5e-2 40 At3g62170 825390 VGDH2 (Vanguard 1 homolog 2) F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-4 48 Glycine max GmaAffx.72063.1.S1_at AW102068 - - 7e-5 At4g29780 unknown protein C.G. S.X.
0.05 6e-3 42 Hordeum vulgare Contig4976_at Contig4976 - - 4e+0 At5g12010 unknown protein C.G. S.X.
0.05 1e-4 50 Oryza sativa Os01g0582600 9629.m03821 - Conserved hypothetical protein 7e-5 At4g29780 unknown protein C.G. S.X.
0.10 2e-5 52 Populus trichocarpa PtpAffx.119343.2.A1_a_at BP936124 hypothetical protein - 4e-6 At4g29780 unknown protein C.G. S.X.
0.05 1e-2 42 Triticum aestivum Ta.10520.1.S1_at AL828817 - - 2e-2 At4g29780 unknown protein C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1620166_at CB982324 hypothetical protein LOC100266613 - 3e-6 At5g26230 unknown protein C.G. S.X.
0.03 2e-6 54 Zea mays Zm.11770.1.A1_at BM380607 hypothetical protein LOC100191551 - 9e-5 At5g12010 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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