Gene omics information

Query gene ID At4g29740
Gene name CKX4 (CYTOKININ OXIDASE 4)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g29740829096CKX4 (CYTOKININ OXIDASE 4)It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.S.X.H.G.
0.5873.8At4g39640830118GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.S.X.H.G.
0.5773.8At5g4854083491033 kDa secretory protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.5570.6At3g52400824405SYP122 (SYNTAXIN OF PLANTS 122)syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathwayS.X.H.G.
0.5368.6At3g09830820141protein kinase, putativeF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.5267.4At3g51450824308strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAFS.X.H.G.
0.5267.4At4g34390829589XLG2 (extra-large GTP-binding protein 2)F:guanyl nucleotide binding, signal transducer activity;P:in 7 processes;C:nucleus;MFPOBS.X.H.G.
0.4963.5At4g34150829563C2 domain-containing proteinF:unknown;P:response to cold;C:unknown;MPFOBVAS.X.H.G.
0.4761.2At2g05940815147protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAS.X.H.G.
0.4659.8At4g14365827080zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
103.599.9GSM128676Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
100.799.9E-MEXP-546-raw-cel-863289586
89.399.9GSM142846MG001_ATH1_A27-Torres-9N1GSE6176Impact of Type III effectors on plant defense responses
82.499.9GSM142844MG001_ATH1_A25-Torres-8N1GSE6176Impact of Type III effectors on plant defense responses
76.799.9GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
74.999.9GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
73.999.9E-MEXP-546-raw-cel-863289404
61.999.8E-MEXP-807-raw-cel-1173273170
59.699.8E-MEXP-807-raw-cel-1173273252
54.499.8GSM142845MG001_ATH1_A26-Torres-8N3GSE6176Impact of Type III effectors on plant defense responses
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.396e-63242At2g19500816469CKX2 (CYTOKININ OXIDASE 2)It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.C.G.S.X.
0.072e-757At5g56970835799CKX3 (CYTOKININ OXIDASE 3)It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.C.G.S.X.
0.026e-136At4g369503770588MAPKKK21member of MEKK subfamilyC.G.S.X.
0.026e-136At1g79370844275CYP79C1member of CYP79CC.G.S.X.
0.036e-136At1g75450843881CKX5 (CYTOKININ OXIDASE 5)This gene used to be called AtCKX6. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.C.G.S.X.
0.013e+034At3g04360819591-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.023e+034At3g58470825016methyltransferase/ nucleic acid bindingF:methyltransferase activity, nucleic acid binding;P:methylation;C:cellular_component unknown;MFPOC.G.S.X.
0.023e+034At2g06200815176AtGRF6 (GROWTH-REGULATING FACTOR 6)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flowerC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.034e+034Glycine maxGmaAffx.13231.1.A1_atBU550392--2e-4At1g75450CKX5 (CYTOKININ OXIDASE 5)C.G.S.X.
0.021e+034Hordeum vulgareHVSMEi0015B11r2_s_atHVSMEi0015B11r2--4e+0At4g17920zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.025e+034Oryza sativaOsAffx.7273.1.S1_at---0C.G.S.X.
0.071e-346Populus trichocarpaPtpAffx.206397.1.S1_atpmrna12708cytokinin oxidase-8e-4At4g29740CKX4 (CYTOKININ OXIDASE 4)C.G.S.X.
0.027e-446Triticum aestivumTa.7446.1.S1_atBJ282310--2e+0At4g31510unknown proteinC.G.S.X.
0.023e+032Vitis vinifera1614113_atCF210267hypothetical protein LOC100259658-2e-2At5g43570serine-type endopeptidase inhibitorC.G.S.X.
0.024e+032Zea maysZm.17846.1.S1_atCF045890hypothetical protein LOC100192743-5e-112At4g18730RPL16BC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0009823The chemical reactions and pathways resulting in the breakdown of cytokinins, a class of adenine-derived compounds that can function in plants as plant growth regulators.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00908Link to KEGG PATHWAYZeatin biosynthesis
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