CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g29560

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.31 33.8 At4g29560 829077 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
1.00 100.0 At1g10890 837632 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVA S.X. H.G.
0.80 89.8 At3g06870 819871 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFVB S.X. H.G.
0.75 86.9 At1g64070 842711 RLM1 (RESISTANCE TO LEPTOSPHAERIA MACULANS 1) Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans. S.X. H.G.
0.57 73.8 At1g49260 841350 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.56 73.0 At2g35460 818111 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein F:unknown;P:unknown;C:cellular_component unknown;P S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
178.0 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
125.3 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
81.8 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
75.2 99.9 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
66.2 99.8 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
60.1 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
57.4 99.8 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
57.0 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.3 99.8 GSM176879 AWP_Control_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
46.9 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 38 At4g16420 827336 ADA2B (HOMOLOG OF YEAST ADA2 2B) Transcriptional co-activator. Essential for the developmental switch from cell proliferation to cell differentiation in response to variations in auxin and cytokinin concentrations. C.G. S.X.
0.01 2e-1 38 At1g29740 839852 kinase F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.02 7e-1 36 At5g22950 832359 VPS24.1 F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOBA C.G. S.X.
0.01 7e-1 36 At3g62570 825431 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding, binding;P:protein folding;C:vacuole;PMFOB C.G. S.X.
0.01 7e-1 36 At3g22220 821786 hAT dimerisation domain-containing protein F:protein dimerization activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;POM C.G. S.X.
0.01 7e-1 36 At3g11150 820285 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max Gma.5929.1.S1_at BQ610446 - - 1e-1 At4g27660 unknown protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HX10P19r_at HX10P19r - - 6e+0 At5g05250 unknown protein C.G. S.X.
0.02 4e-1 38 Oryza sativa Os03g0606200 AB055076.1 - Conserved hypothetical protein 1e-21 At3g46430 unknown protein C.G. S.X.
0.04 3e-4 48 Populus trichocarpa PtpAffx.206392.1.S1_at pmrna12702 hypothetical protein - 2e-4 At4g29560 unknown protein C.G. S.X.
0.02 8e-1 36 Triticum aestivum TaAffx.8902.1.S1_at CA618391 - - 1e-2 At5g01760 VHS domain-containing protein / GAT domain-containing protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1610647_at CF209690 hypothetical protein LOC100240917 - 2e-4 At1g08980 AMI1 (AMIDASE 1) C.G. S.X.
0.02 8e-2 38 Zea mays Zm.13608.1.S1_at AY107589.1 - - 2e-5 At3g53420 PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage